Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F15
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    27   2.1  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    26   3.7  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    25   6.4  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    25   8.5  

>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 136 SPVSSLDNSIMANNFISNNMYPPPP 210
           SP S+   S++  NF+++   PPPP
Sbjct: 523 SPSSNTSASVLTRNFVAHRDPPPPP 547


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 142 VSSLDNSIMANNFISNNMYPPPPCPHVLIFFCKLVI 249
           V  L N +  + + S+ +Y   PCP + +  C++++
Sbjct: 224 VGKLKNIVFEHGYSSDYLYYSVPCPWLQVNLCRILL 259


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 566 TFHICDRPHI 595
           T HICDRPHI
Sbjct: 400 THHICDRPHI 409


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 283 EKKRTIFTVIFRRSQTILMKKNLNHRGIAKV 375
           ++ +   + I ++S+ ++ + NLNHRG  +V
Sbjct: 76  DQNQLYLSPISKKSEKLIFRFNLNHRGYLEV 106


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 215 GHGGGGYILFDIKLFAIILLSREETGDYVSM 123
           G   GGY+ + +   A +L   ++ G YVSM
Sbjct: 344 GSSSGGYMGYVLSYAAKMLFGIDDVGPYVSM 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,191
Number of Sequences: 5004
Number of extensions: 51403
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)