Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F15
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549...    29   2.8  
06_03_0851 - 25363870-25364006,25364586-25364889,25365232-25365975     28   6.6  

>06_03_1036 +
           27053480-27053729,27054616-27054704,27054881-27054950,
           27055145-27055228,27055332-27055408,27055519-27055583,
           27055723-27055765,27055889-27055952,27056126-27056254,
           27056522-27056625,27056724-27056828
          Length = 359

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 228 NQNVRAWRWWIHII*YKIIC 169
           N+  R W WW +++ YKI C
Sbjct: 39  NETGRPWAWWDYVMDYKIRC 58


>06_03_0851 - 25363870-25364006,25364586-25364889,25365232-25365975
          Length = 394

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 155 SREETGDYVSME*TPIAYPVKHSISFYRK 69
           S EETGD   +E T I  P  H ISF ++
Sbjct: 318 SSEETGDEDLLENTKIMLPQAHVISFQKR 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,494,116
Number of Sequences: 37544
Number of extensions: 298511
Number of successful extensions: 574
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)