Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F15
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL032623-14|CAA21518.1|  593|Caenorhabditis elegans Hypothetical...    28   4.4  
Z29117-13|CAA82377.2|  435|Caenorhabditis elegans Hypothetical p...    28   5.9  
U23454-6|AAC46521.1|  192|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 196  YPPPPCPHVLIFFCKLVIVETRSL*KLYYEKKRTIFTVIFRRSQTI-LMKKNLNHRGIAK 372
            YP     H+++F  + VI +TR   + Y +K+R+ +    + SQ+    + NLN    AK
Sbjct: 1294 YPNARNEHIMLFLARTVIRQTRE--QTYSQKRRSRYRTAMQTSQSSGTPEHNLNPPKFAK 1351


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 196  YPPPPCPHVLIFFCKLVIVETRSL*KLYYEKKRTIFTVIFRRSQTI-LMKKNLNHRGIAK 372
            YP     H+++F  + VI +TR   + Y +K+R+ +    + SQ+    + NLN    AK
Sbjct: 1294 YPNARNEHIMLFLARTVIRQTRE--QTYSQKRRSRYRTAMQTSQSSGTPEHNLNPPKFAK 1351


>AL032623-14|CAA21518.1|  593|Caenorhabditis elegans Hypothetical
           protein Y43F8B.14 protein.
          Length = 593

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 376 LFYVLFYN*KKINNRSSFRGGNWVL*SDISSILHTVKSARAAVVPFVLHDFGVKRDSN 549
           L  +LF N +K  + +S  G + VL +    +L T+KS   +    + HDF  K D N
Sbjct: 100 LSLILFNNIRKAPSLASLAGKDIVLIN--YGLLKTIKSWSVSWERIIFHDFPDKNDKN 155


>Z29117-13|CAA82377.2|  435|Caenorhabditis elegans Hypothetical
           protein C48B4.2 protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 148 SLDNSIMANNFISNNMYPPPPCPHVLIFFC 237
           S  + ++ +N +SN++YP    P +LI  C
Sbjct: 389 SYSHVLLISNAVSNSLYPTTSPPSILIVLC 418


>U23454-6|AAC46521.1|  192|Caenorhabditis elegans Hypothetical
           protein C10A4.7 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +1

Query: 184 SNNMYPPPPCPHVLIFFCKLVIVET-RSL*KLYYEKKRTIFTVIFRRSQTILMKKNLNHR 360
           S +MY   PC  +  FFC   + +T R   ++      T+  V F     I   + LN R
Sbjct: 24  STDMYTYFPCQEICFFFCYCFVSKTIRDFVQITAGVDLTLSCVSFTIGVVITSVQILNSR 83

Query: 361 GIAKVLFYVLFYN 399
            +   L   +F N
Sbjct: 84  ILFAFLLITIFKN 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,903,785
Number of Sequences: 27780
Number of extensions: 286238
Number of successful extensions: 528
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)