Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F14
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   130   6e-32
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   126   1e-30
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   0.81 
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    27   0.81 
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   3.3  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   3.3  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   4.3  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   5.7  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   5.7  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    24   7.6  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    24   7.6  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    24   10.0 

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  130 bits (315), Expect = 6e-32
 Identities = 61/121 (50%), Positives = 84/121 (69%)
 Frame = +2

Query: 35  KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 214
           + I  ++ + IPE ++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61

Query: 215 KKELAAVRTVCSHVENMIKGVTNGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYI 394
           +K  A +RT  S + NMI GVT GF+YKMR VYAHFPIN   TE  T++EIRNFLGE+  
Sbjct: 62  RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 395 R 397
           R
Sbjct: 122 R 122


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  126 bits (305), Expect = 1e-30
 Identities = 59/121 (48%), Positives = 83/121 (68%)
 Frame = +2

Query: 35  KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 214
           + I  ++ + IP+ +TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61

Query: 215 KKELAAVRTVCSHVENMIKGVTNGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYI 394
           +K  A +R+V S + NMI GVT GF+YKMR VYAHFPIN   TE  T++EIRNFLGE+  
Sbjct: 62  RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 395 R 397
           R
Sbjct: 122 R 122


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
 Frame = +2

Query: 95   SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMI-- 268
            S+L  +   + ++ RN + L++  ++VN     +E W G +   +AV T  + ++++   
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169

Query: 269  --KGVTNGFQYKMRAVYAHFPINCVTTEGNTIIE 364
              K  TN     M  VY    + CV T   TI++
Sbjct: 1170 LSKIPTNLLDLPMFQVY----LGCVDTLIQTIVK 1199


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 60  TFWFATICFILGLCLT 13
           TFWF +IC IL +C +
Sbjct: 281 TFWFQSICLILYICFS 296


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 319 MSVHCTHLVLESIGHTFDHVFDMRAYCPNSS*FFFRTE 206
           +S H   + L  +  T D ++ +  YCPN   F + TE
Sbjct: 72  VSSHPYIITLHRVLETEDAIYVVLQYCPNGDLFTYITE 109


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 228 ASSFLEPNHFSTFNWRGLTMRMSTAKCLKF 139
           +SS   PNH ++   RGLT   ST    K+
Sbjct: 278 SSSNTSPNHLASVPNRGLTSNSSTGSFTKY 307


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 130 NSARTFHCHQTRFHMDGETLRNLH 59
           +S R FH  Q+ FH++G    N++
Sbjct: 573 HSVRFFHAIQSHFHLEGPIRYNMN 596


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 143  FKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKGVTN 283
            F H +VD+ +      + E WF        + T+CS + N++  VT+
Sbjct: 1594 FTHGSVDMLIEQNNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVTD 1640


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 69  GIFTFWFATICFILGLCLT 13
           G+   WFA +CF  G  LT
Sbjct: 276 GVVLIWFAWLCFNSGTLLT 294


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 379 KEVTDLNNCVSLSGDTVDREMSVHCTHLVLESIGHTF 269
           KE+T +   V   G  VD+E S    HLV  +   TF
Sbjct: 752 KELTSVGETVYRIGQLVDKESSSERCHLVNLNKWETF 788


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 151 VFEVSF*NSARTFHCHQTRFHMDGETLRNLH 59
           V E S  N A+ FH    R  + G  L NLH
Sbjct: 144 VIEFSSPNIAKPFHAGHLRSTIIGSFLANLH 174


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -2

Query: 394 YVLFTKEVTDLNNCVSLSGDTVDREMSVHCTHLVLE 287
           Y+     +  +N  +++ G  +   +S  CTHLV++
Sbjct: 206 YICRKNALLQINKSLTIDGTNISANLS--CTHLVIQ 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,299
Number of Sequences: 5004
Number of extensions: 33222
Number of successful extensions: 89
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)