Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_F14
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044 155 9e-39
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17... 147 3e-36
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 30 0.77
03_01_0004 + 41829-42203,42376-42474,42699-42743,43604-43741,438... 29 1.8
03_01_0567 + 4186620-4186694,4186766-4186852,4187293-4187932,418... 28 2.4
11_04_0312 - 16259612-16260231,16260264-16262796 27 5.5
06_03_0675 - 23428948-23431389 27 5.5
03_06_0712 - 35683814-35684065,35685296-35685466 26 9.5
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783 26 9.5
>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
Length = 190
Score = 155 bits (377), Expect = 9e-39
Identities = 70/123 (56%), Positives = 97/123 (78%), Gaps = 1/123 (0%)
Frame = +2
Query: 32 MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RQLKVEKWF 208
MK I+A++ ++IPE +TV V +++VTV+GPRG L RNFKHL +D +++ R+L+V+ WF
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60
Query: 209 GSKKELAAVRTVCSHVENMIKGVTNGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEK 388
G+++ +AA+RT SHV+N+I GVT G++YKMR VYAHFPIN T NT IEIRNFLGEK
Sbjct: 61 GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120
Query: 389 YIR 397
+R
Sbjct: 121 KVR 123
>02_01_0029 -
176002-176137,176495-176646,177166-177577,178010-178126,
178260-178322,178964-179167,180605-180687,182394-182516,
182987-183328
Length = 543
Score = 147 bits (356), Expect = 3e-36
Identities = 66/116 (56%), Positives = 90/116 (77%), Gaps = 3/116 (2%)
Frame = +2
Query: 59 VKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RQLKVEKWFGSKKELA 229
++IP +TVHV +++VTV+GPRG L RNFKHL +D +++ R+L+V+ WFG+++ +A
Sbjct: 1 MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60
Query: 230 AVRTVCSHVENMIKGVTNGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYIR 397
A+RT SHV+N+I GVT G++YKMR VYAHFPIN T NT IEIRNFLGEK +R
Sbjct: 61 AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVR 116
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 29.9 bits (64), Expect = 0.77
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2
Query: 388 LFTKEVTDLNNCVSLSGDTVDRE 320
L KEVTD++ C+++ TVDRE
Sbjct: 219 LVPKEVTDMSGCINIFHATVDRE 241
>03_01_0004 +
41829-42203,42376-42474,42699-42743,43604-43741,
43852-44157,44779-45689,45826-46093
Length = 713
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 187 VESGEMVRF*KRTSCC*DSMLSCRKHDQRCDQWI 288
V+ G R +CC C+ +D RCD W+
Sbjct: 78 VKWGSDHRLLSAAACCESCKAMCKANDCRCDSWV 111
>03_01_0567 +
4186620-4186694,4186766-4186852,4187293-4187932,
4188009-4188094,4189620-4190010,4190102-4190172,
4190738-4190856,4191517-4191793
Length = 581
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 134 KRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKGVTN 283
+R+ H D + P Q + +FGS++ ++ + S +EN + G N
Sbjct: 255 RRDASHYNGDSSIGAPVQNLTDAYFGSRRSFSSTMDIMSQLENKVDGRFN 304
>11_04_0312 - 16259612-16260231,16260264-16262796
Length = 1050
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/72 (22%), Positives = 32/72 (44%)
Frame = +2
Query: 62 KIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRT 241
K+ + H++ L+ L NF + +++ + S K+LAAVRT
Sbjct: 545 KLTAPVCEHLQLLLLRNNSSLHELPENFFQSMQQLAVLDMSNSSIHSLLLSTKDLAAVRT 604
Query: 242 VCSHVENMIKGV 277
+C + + +G+
Sbjct: 605 LCLNDSKVSRGI 616
>06_03_0675 - 23428948-23431389
Length = 813
Score = 27.1 bits (57), Expect = 5.5
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Frame = -3
Query: 297 LYW-NPLVT----PLIMFST*EHTVLTAASSFLEPNH--FSTFNWR-GLTMRMSTAKCLK 142
+YW NP + I F+T VL ++ FL ++ F +W G+ R++
Sbjct: 200 IYWPNPFINMWAKKRISFNTTTFGVLDSSGHFLGSDNASFMAADWGPGIMRRLTLDYDGN 259
Query: 141 FRFRTPRGPFTVTKRDFTWTVRLSGIFTFWFATICFILGLCLTQASC 1
R +++ K D TW V F +CF+ GLC C
Sbjct: 260 LRL------YSLNKTDGTWLVTWMA-----FTNLCFVRGLCGMNGIC 295
>03_06_0712 - 35683814-35684065,35685296-35685466
Length = 140
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 128 VLKRNF-KHLAVDIRMVNPRQLKVE 199
VLKR+F + AVD+R +NP+ K E
Sbjct: 5 VLKRHFSRKRAVDVRRINPKVPKEE 29
>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
Length = 1439
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 34 EANSCKPKGEDS*ESHRPCEIAFGDSERSSRSSK-TKLQ 147
E+N +P E+ + P AFGD ++ SK KLQ
Sbjct: 715 ESNQYEPVPEEQIDRRLPLVFAFGDDDKLEEKSKHDKLQ 753
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,712,943
Number of Sequences: 37544
Number of extensions: 208025
Number of successful extensions: 453
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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