Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F13
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   165   2e-42
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   165   2e-42
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    27   1.4  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   3.1  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   5.5  
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    25   5.5  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    24   9.5  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    24   9.5  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  165 bits (402), Expect = 2e-42
 Identities = 77/126 (61%), Positives = 93/126 (73%)
 Frame = +2

Query: 11  MKLNVHTRQRDVRSYFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 190
           MKLN+       +   E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 191 FPMKQXVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 370
           FPM Q VL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 371 IPGLTD 388
           IPGLTD
Sbjct: 121 IPGLTD 126


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  165 bits (401), Expect = 2e-42
 Identities = 76/126 (60%), Positives = 93/126 (73%)
 Frame = +2

Query: 11  MKLNVHTRQRDVRSYFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 190
           MKLN+       +   E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 191 FPMKQXVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 370
           FPM Q VL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 371 IPGLTD 388
           IPGLTD
Sbjct: 121 IPGLTD 126


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 255 EWPFDIKRRTRLLVRTXCFIGKPCLSLP 172
           EWP  +K   +LLVRT  +   PC + P
Sbjct: 26  EWPLLLKNFDKLLVRTGHYTPIPCGNNP 53


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 2   IAVMKLNVHTRQRDVRSYFEVVDEHKL 82
           +A  K+ V TR+ DV+    + D HK+
Sbjct: 627 VASEKIAVSTRRSDVKPNIPITDSHKI 653


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 233 LLMSKGHSCYRPRRDGERKRKSVRGCIVD 319
           ++ SK +S  +P+  G  KRK+ R  +VD
Sbjct: 97  VVTSKKNSRSKPKNGGASKRKASRRTVVD 125


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 125 LHQLQRPYAFHRRYGACAHPPLQNNF*HPV 36
           LH+ ++ YA  RRY +    P  +N   P+
Sbjct: 63  LHEEEKVYALVRRYASPEEYPFTDNLPEPI 92


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 56  FEVVDEHKLRIFYEKRMGAEVDADLLGDEW 145
           FE V EH L   Y+K +  ++D  L+   W
Sbjct: 350 FEYVLEHTLPHLYQKIIELDMDLKLITINW 379


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -2

Query: 172 AGNTENITFPFVA*KICINFSAHT--LFIEDTELVLIHHFKITSDIPL 35
           AG+  ++    +  +I  N    T  LF+ ++   LIH F   SD P+
Sbjct: 240 AGDNIDVAIKKLCIRILFNIYTQTDPLFMAESTKSLIHFFAAKSDTPV 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,359
Number of Sequences: 5004
Number of extensions: 27066
Number of successful extensions: 62
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)