Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_F13
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 153 4e-38
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 151 2e-37
11_04_0329 - 16442298-16443734 29 1.7
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 4.0
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 27 5.3
08_01_0167 + 1370733-1371316,1371590-1371765,1371865-1372101,137... 27 5.3
06_01_0440 + 3127197-3127700,3128299-3128670 27 5.3
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545... 27 7.0
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 27 7.0
02_05_0006 - 24897409-24897922,24898041-24898303 27 7.0
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 27 7.0
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 26 9.2
05_01_0576 - 5130589-5131995 26 9.2
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 26 9.2
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 153 bits (372), Expect = 4e-38
Identities = 73/128 (57%), Positives = 93/128 (72%), Gaps = 2/128 (1%)
Frame = +2
Query: 11 MKLNVHTRQRDVRSYFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 190
MK N+ + E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 191 FPMKQXVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 364
FPMKQ VLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120
Query: 365 QEIPGLTD 388
++PGLTD
Sbjct: 121 NDLPGLTD 128
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 151 bits (366), Expect = 2e-37
Identities = 72/128 (56%), Positives = 92/128 (71%), Gaps = 2/128 (1%)
Frame = +2
Query: 11 MKLNVHTRQRDVRSYFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 190
MK N+ + E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 191 FPMKQXVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 364
FPMKQ VLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120
Query: 365 QEIPGLTD 388
++PGLTD
Sbjct: 121 NDLPGLTD 128
>11_04_0329 - 16442298-16443734
Length = 478
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 372 ISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 265
+ CAP M LAS+ P + LRF S RRG
Sbjct: 77 LPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 53 YFEVVDEHKLRIFYEKR 103
Y E+ DE KLRI YEK+
Sbjct: 497 YQEIKDEEKLRILYEKK 513
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 53 YFEVVDEHKLRIFYEKRMGAEVDADLLGDE 142
Y EV +LRI YEKR+ + D+ GDE
Sbjct: 495 YKEVKAGERLRIDYEKRLNHLRNQDVKGDE 524
>08_01_0167 +
1370733-1371316,1371590-1371765,1371865-1372101,
1372377-1372495,1372530-1372906,1373012-1373117,
1373520-1373606,1375367-1375421,1375775-1376311,
1377669-1377739,1377899-1377938,1379560-1379852
Length = 893
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 73 LIHHFKITSDIPLPGMNVQLHDC 5
LI+ F T++IPLP L++C
Sbjct: 673 LIYFFPCTNEIPLPNAGYHLYNC 695
>06_01_0440 + 3127197-3127700,3128299-3128670
Length = 291
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 151 TFPFVA*KICINFSAHTLFIEDTELVLIHHFKITSDI 41
TFP VA C F+ +LF TEL +F + SD+
Sbjct: 190 TFPHVA-WACFEFTGRSLFNLRTELARRLNFAVVSDV 225
>09_06_0032 +
20353789-20353963,20354240-20354340,20354426-20354560,
20354633-20354714,20354829-20354896,20354984-20355073,
20355133-20355257,20355384-20355717,20355841-20355957,
20356058-20356485,20356564-20356813,20356944-20357194,
20357278-20357587
Length = 821
Score = 26.6 bits (56), Expect = 7.0
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 125 DLLGDEWKGYVLRVAGGNDKQGFPMKQXVLTNSRVRLLMSKGHSCYRPRRDGERKR 292
DL G E + AG K+G + + +LT +V +SKG + + P RD + R
Sbjct: 221 DLAGSE-RASQTASAGMRLKEGSHINRSLLTLGKVIRQLSKGRNGHIPYRDSKLTR 275
>08_02_1482 -
27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 26.6 bits (56), Expect = 7.0
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 125 DLLGDEWKGYVLRVAGGNDKQGFPMKQXVLTNSRVRLLMSKGHSCYRPRRDGERKR 292
DL G E + AG K+G + + +LT +V +SKG + + P RD + R
Sbjct: 224 DLAGSE-RASQTASAGVRLKEGSHINRSLLTLGKVVRQLSKGRNGHIPYRDSKLTR 278
>02_05_0006 - 24897409-24897922,24898041-24898303
Length = 258
Score = 26.6 bits (56), Expect = 7.0
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +2
Query: 125 DLLGDEWKGYVLRVAGGNDKQGFPMKQXVLTNSRVRL--LMSKGHSCYRPRRDGERKRKS 298
DLLG+ W R+ G D + +K T+ + RL S G P+R +K +
Sbjct: 83 DLLGNRWSAIAARLPGRTDNE---IKNVWHTHLKKRLEPKPSSGREAAAPKRKATKKAAA 139
Query: 299 V 301
V
Sbjct: 140 V 140
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 197 MKQXVLTNSRVRLLMSKGHSCYRPRRDGERK 289
++ + + R R+ M++GHS YRP G+ K
Sbjct: 432 IRDETMYDPRERIEMAQGHSLYRPSLLGQPK 462
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 65 VDEHKLRIFYEKRMGAEVDADLLGDEWKGYVL 160
++ + +RIF + + E D++ EW GY+L
Sbjct: 139 IEYYYIRIFENQDVEIEEKVDVIISEWMGYML 170
>05_01_0576 - 5130589-5131995
Length = 468
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 98 KRMGAEVDADLLGDEWKGYVLRVAGGN 178
+R G E+DADLL DE + GGN
Sbjct: 405 ERSGGELDADLLHDELVDDGVVAGGGN 431
>03_01_0099 +
778521-778736,779521-779775,779831-779924,780064-780116,
780301-780339,781091-781159,781275-781445,781533-781598,
782533-782601,782993-783060,783308-783430,784095-784228,
784412-784506,784600-784644,784755-784814,785548-785599,
785674-785714,785857-785921,786704-786755,787021-787092
Length = 612
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 332 LKG*HQQCNHEQTCVSS 282
L G H + NHEQTCV++
Sbjct: 358 LSGKHFRLNHEQTCVTA 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,374,845
Number of Sequences: 37544
Number of extensions: 205527
Number of successful extensions: 546
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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