Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F13
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   182   8e-47
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    27   4.7  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    27   4.7  
AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical ...    27   4.7  
U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    26   8.2  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    26   8.2  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  182 bits (443), Expect = 8e-47
 Identities = 85/126 (67%), Positives = 100/126 (79%)
 Frame = +2

Query: 11  MKLNVHTRQRDVRSYFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 190
           M+LN       ++  FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 191 FPMKQXVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 370
           FPMKQ +LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 371 IPGLTD 388
           I GLTD
Sbjct: 121 IEGLTD 126


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 152 NLSIRRLEDLHQLQRPYAFHRRY 84
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 152 NLSIRRLEDLHQLQRPYAFHRRY 84
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK6.2 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 228 TRLLVRTXCFIGKPCLSLPPATRR 157
           TR +    CF+G+ C   PP TR+
Sbjct: 37  TRTMPIKKCFLGENCFERPPFTRK 60


>U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical
           protein C45G9.6a protein.
          Length = 542

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 320 HQQCNHEQTCVSSHRHDVVCSKSGLLTSRDVHGC*SGLPVS*GSPACRY 174
           H+QC +   C+S  R    C+ +G    RD+  C + +  + GS  C Y
Sbjct: 417 HRQCLYHSDCISGQR----CTPTG----RDIATCETDISATIGSIQCFY 457


>U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical
           protein ZK418.11 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 325 PFSLSPGHCPQRC 363
           P S +PG CPQRC
Sbjct: 13  PKSCNPGECPQRC 25


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 311 CNHEQTCVSSHRHDVVCS-KSGLLTSRDVHGC*SGLPVS*GSPACRYRRQHG 159
           C ++ TC+ +  H  VC  K+G +  R    C    P+  G   C  R + G
Sbjct: 413 CENDGTCMHTSDHSPVCQCKNGFIGKR----CEKECPIGFGGVRCDLRLEIG 460


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 311 CNHEQTCVSSHRHDVVCS-KSGLLTSRDVHGC*SGLPVS*GSPACRYRRQHG 159
           C ++ TC+ +  H  VC  K+G +  R    C    P+  G   C  R + G
Sbjct: 413 CENDGTCMHTSDHSPVCQCKNGFIGKR----CEKECPIGFGGVRCDLRLEIG 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,508,264
Number of Sequences: 27780
Number of extensions: 165383
Number of successful extensions: 371
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)