Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F12
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    28   0.71 
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    27   1.6  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   2.9  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   3.8  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    25   5.0  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   6.7  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    25   8.8  

>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 76  IGHV-HSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV 183
           I H+ H KS L+    ++   +N HN+R Q L K +V
Sbjct: 64  IAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEV 100


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = +1

Query: 343 STTDSTYKLN-----VDNAMESWFNDYKDYKYAPLKQSD 444
           S+ +S +K+N     ++   ESWF D  D+ ++ +K  D
Sbjct: 452 SSFESLFKMNALLFILEQGFESWFRDSSDHIFSRVKDDD 490


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 325 ENLYWYSTTDSTYKLNVDN 381
           +N YW  TTDS ++L V+N
Sbjct: 356 KNTYWLYTTDSLHELVVNN 374


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 142 GHNYRRQLLAKGQVSGHPAATE 207
           G N+RRQLL  G+  G  AA+E
Sbjct: 854 GDNWRRQLLENGKSFGLEAASE 875


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 391 SWFNDYKDYKYAPLKQSDFDKSKPNI 468
           SW  DY D  Y  +   DFD ++ +I
Sbjct: 22  SWHQDYSDSAYIYIGNLDFDLNEDDI 47


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 325  ENLYWYSTTDSTYKLNVDNAMESWFNDYKD 414
            + L W S   +     + N +  W NDYKD
Sbjct: 1124 DRLIWQSLDTTPDNKLLKNILYIWLNDYKD 1153


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 34  MAVRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNG 144
           MAV   ++  +V+   ++  K LL+  CK + + + G
Sbjct: 91  MAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRG 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,156
Number of Sequences: 5004
Number of extensions: 42574
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)