Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F11
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0157 - 14547645-14547935                                         61   4e-10
02_05_0351 + 28230695-28230882,28230998-28231143,28231264-282313...    29   2.6  
03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183...    28   4.5  
05_04_0029 - 17321378-17321905,17323348-17323525,17323531-173239...    27   7.9  

>12_02_0157 - 14547645-14547935
          Length = 96

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 24/76 (31%), Positives = 41/76 (53%)
 Frame = +2

Query: 98  IDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVYILGAGFLLAAVLTVPPWPMYR 277
           +D+ GQ  AE L + ++   ++  F+ GY +  F   + +   G +L A++TVP WP + 
Sbjct: 1   MDWQGQKLAEMLMQLLLVASAVAAFVVGYAMADFQLMLLVYAGGVVLTALVTVPNWPFFN 60

Query: 278 RNPLNWQNPRNTDEKP 325
           R+PL W +    D  P
Sbjct: 61  RHPLKWLDAAEADRHP 76


>02_05_0351 +
           28230695-28230882,28230998-28231143,28231264-28231343,
           28231805-28231907,28233027-28233050,28233246-28233418,
           28233742-28233888,28234011-28234082,28234387-28234505,
           28234626-28234739,28234994-28235039,28235169-28235252
          Length = 431

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 260 PWPMYRRNPLNWQNPRNTDEKPTXXXXXXXXXXTCINSFKYYFSYFYIN 406
           PWPM  R+  N ++   T+E             +C  +++YY SYF+ N
Sbjct: 253 PWPMPGRDASNRKSL--TEEHYWLGDPPVEPPFSCFAAYRYYLSYFWAN 299


>03_05_0815 +
           27917516-27917767,27918024-27918110,27918281-27918394,
           27919644-27919835,27919925-27921677,27921771-27922708,
           27923587-27923859
          Length = 1202

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 150 VIIALYNFSAFACPT*SICVGMDEKKSI 67
           +++ L+N SA  C   S+C+GM   K++
Sbjct: 55  ILVLLFNLSAILCQYLSMCIGMVTGKNL 82


>05_04_0029 -
           17321378-17321905,17323348-17323525,17323531-17323910,
           17323936-17324052
          Length = 400

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 166 WFHLGLYCSTVFTICIYPWSWISTCCCPDR 255
           W  L L+ + V  IC Y  + I  C C DR
Sbjct: 42  WLSLALF-AMVGAICFYTGNLIDRCMCADR 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,306,022
Number of Sequences: 37544
Number of extensions: 240471
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)