Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F11
         (482 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L38852-1|AAL31361.1|  102|Homo sapiens signal peptidase 12kDa su...    99   7e-21
BC000884-1|AAH00884.1|  104|Homo sapiens signal peptidase comple...    96   5e-20
AK131468-1|BAD18613.1|  699|Homo sapiens protein ( Homo sapiens ...    30   4.9  

>L38852-1|AAL31361.1|  102|Homo sapiens signal peptidase 12kDa
           subunit protein.
          Length = 102

 Score = 99.1 bits (236), Expect = 7e-21
 Identities = 42/90 (46%), Positives = 63/90 (70%), Gaps = 3/90 (3%)
 Frame = +2

Query: 65  IMDFFSSIPTHIDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVYILGAGFLLAA 244
           +++  SS+PT +DY GQ  AE++++ I    +IVGFI+GY+ +QF  +VYI+ AGF  + 
Sbjct: 1   MLEHLSSLPTQMDYKGQKLAEQMFQGIYLFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSC 60

Query: 245 VLTVPPWPMYRRNPLNW---QNPRNTDEKP 325
           +LT+PPWP+YRR+PL W   Q     D+KP
Sbjct: 61  LLTLPPWPIYRRHPLKWLPVQESSTDDKKP 90


>BC000884-1|AAH00884.1|  104|Homo sapiens signal peptidase complex
           subunit 1 homolog (S. cerevisiae) protein.
          Length = 104

 Score = 96.3 bits (229), Expect = 5e-20
 Identities = 44/92 (47%), Positives = 64/92 (69%), Gaps = 5/92 (5%)
 Frame = +2

Query: 65  IMDFFSSIPTHIDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVYILGAGFLLA- 241
           +++  SS+PT +DY GQ  AE++++ II   +IVGFI+GY+ +QF  +VYI+ AGF  + 
Sbjct: 1   MLEHLSSLPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSC 60

Query: 242 -AVLTVPPWPMYRRNPLNW---QNPRNTDEKP 325
            A LT+PPWP+YRR+PL W   Q     D+KP
Sbjct: 61  LAQLTLPPWPIYRRHPLKWLPVQESSTDDKKP 92


>AK131468-1|BAD18613.1|  699|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16636 fis, clone TESTI4025494, weakly  similar
           to Zinc finger protein 33A. ).
          Length = 699

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -1

Query: 338 LSCLSVSHRYFLDSASSMDFCDTWAMEARSGQQQVEIQLQGYIQIVKTV 192
           LS ++   +Y  + A   + CD W +  + G+   + +   Y +IVKT+
Sbjct: 148 LSLMAPHCQYSKEKAHERNVCDKWLISIKDGRTNTQEKSFAYSKIVKTL 196


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,131,428
Number of Sequences: 237096
Number of extensions: 1511469
Number of successful extensions: 7106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7105
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)