Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_F11
(482 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043693-5|AAB97532.1| 105|Caenorhabditis elegans Hypothetical ... 71 3e-13
CU457744-3|CAM36369.1| 247|Caenorhabditis elegans Hypothetical ... 30 1.0
Z72512-5|CAA96667.2| 351|Caenorhabditis elegans Hypothetical pr... 27 5.4
U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z68114-6|CAA92160.1| 316|Caenorhabditis elegans Hypothetical pr... 27 7.1
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm... 27 9.4
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm... 27 9.4
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ... 27 9.4
AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical ... 27 9.4
AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical ... 27 9.4
>AF043693-5|AAB97532.1| 105|Caenorhabditis elegans Hypothetical
protein C34B2.10 protein.
Length = 105
Score = 71.3 bits (167), Expect = 3e-13
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Frame = +2
Query: 86 IPTHIDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVY-ILGAGFLLAAVLTVPP 262
+ +HID+ GQ AE+ Y+ I+T+ I+GF+ G+ QQ S +++ +LGA A ++ +PP
Sbjct: 15 LSSHIDFQGQKVAERTYQVILTIAGIIGFLVGFWTQQLSYAMFTVLGASAFTALII-LPP 73
Query: 263 WP-MYRRNPLNWQNPRNTDE 319
WP ++R+NP+ W P E
Sbjct: 74 WPFLFRKNPIVWHTPAEPQE 93
>CU457744-3|CAM36369.1| 247|Caenorhabditis elegans Hypothetical
protein T06A10.4 protein.
Length = 247
Score = 29.9 bits (64), Expect = 1.0
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +1
Query: 97 Y*LCWTSKG*KIIQSDNHIIQYSWFHLGLYCSTVFTICIYPWSWISTCCCPDRASMAHVS 276
Y C K +I+ +N +Y WFH C + T W + C A++A
Sbjct: 177 YCWCQLDKNDTMIECENPGCKYGWFH--FTCIGMITAPAGDWYCTNECRAQGLAAVAEAP 234
Query: 277 QKSIELAESKK 309
QK+ + KK
Sbjct: 235 QKAPQRKGLKK 245
>Z72512-5|CAA96667.2| 351|Caenorhabditis elegans Hypothetical
protein R07B5.7 protein.
Length = 351
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 403 YVKIREIIFKTIYTSFSISFFPFLAC 326
Y+K+ I F T Y ++S FPFL C
Sbjct: 117 YIKL--IFFLTFYFNYSAMVFPFLLC 140
>U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical
protein T19D12.10 protein.
Length = 455
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 152 LFSIVGFI---WGYIVQQFSQSVYILGAGFLLAAVLTVPPWPMYRRNPLNWQN 301
LFS +G I W I + S + L AGF L+ ++T+P + + L W++
Sbjct: 136 LFSSIGSISEGWSPIAE-ISTYIAFLSAGFQLSNIITMPLSGILCESSLGWRS 187
>Z68114-6|CAA92160.1| 316|Caenorhabditis elegans Hypothetical
protein F17A2.9 protein.
Length = 316
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 113 QAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVYILGAGFLL 238
Q K +L AIIT S++G++ + F +V I G+ FLL
Sbjct: 158 QKKFNEL-NAIITDHSVIGYVISGRISSFLLTVIIFGSVFLL 198
>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform a protein.
Length = 1117
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 293 WQNPRNTDEKPTXXXXXXXXXXTCINSFKYYFSYF 397
W+NP TDEK IN + FS+F
Sbjct: 64 WRNPAATDEKHANQRAYVTCNYDMINPSNWLFSHF 98
>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform b protein.
Length = 1122
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 293 WQNPRNTDEKPTXXXXXXXXXXTCINSFKYYFSYF 397
W+NP TDEK IN + FS+F
Sbjct: 64 WRNPAATDEKHANQRAYVTCNYDMINPSNWLFSHF 98
>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
tyrosine kinase protein.
Length = 1122
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 293 WQNPRNTDEKPTXXXXXXXXXXTCINSFKYYFSYF 397
W+NP TDEK IN + FS+F
Sbjct: 64 WRNPAATDEKHANQRAYVTCNYDMINPSNWLFSHF 98
>AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1b protein.
Length = 389
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 371 YLYKFFHFIFSLSCLSV 321
Y Y FFHF+F+L+ L V
Sbjct: 320 YSYSFFHFMFALASLYV 336
>AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1a protein.
Length = 459
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 371 YLYKFFHFIFSLSCLSV 321
Y Y FFHF+F+L+ L V
Sbjct: 390 YSYSFFHFMFALASLYV 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,359,253
Number of Sequences: 27780
Number of extensions: 239030
Number of successful extensions: 730
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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