Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F11
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.1  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 74  NPLSFSKENAELQKPQQQILVY 9
           NP+ ++  N + +KP ++IL +
Sbjct: 423 NPIIYATLNRDFRKPFREILYF 444


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 319 ETDRQEREKMKWKNL 363
           E DR+ER +  WK +
Sbjct: 410 EQDRRERMEFDWKQV 424


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/41 (19%), Positives = 17/41 (41%)
 Frame = +2

Query: 92  THIDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVY 214
           T  DY  +      +++I  +  +    W Y+   +S+  Y
Sbjct: 110 TRFDYFARTVPPDTFQSIALVDVVKSANWSYVSTVYSEGSY 150


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/41 (19%), Positives = 17/41 (41%)
 Frame = +2

Query: 92  THIDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVY 214
           T  DY  +      +++I  +  +    W Y+   +S+  Y
Sbjct: 200 TRFDYFARTVPPDTFQSIALVDVVKSANWSYVSTVYSEGSY 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,891
Number of Sequences: 438
Number of extensions: 3203
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)