Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_F10
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272... 29 1.4
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 29 1.8
01_01_0910 + 7175107-7175319,7175448-7175588,7175696-7175866 28 3.2
08_02_0146 - 13195691-13196658,13197613-13197809,13198002-131984... 27 4.3
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 27 5.6
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 27 5.6
11_06_0385 + 22998153-22998329,22999642-22999823,23004817-230051... 26 9.9
11_06_0384 + 22990773-22990949,22991315-22991496,22992533-229928... 26 9.9
05_03_0211 + 10236867-10237075,10238036-10238270,10238433-102386... 26 9.9
>08_02_0154 -
13324384-13325351,13326306-13326502,13326695-13327274,
13328324-13328446,13328803-13329130
Length = 731
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = -3
Query: 310 LVTPPSSSLL*ASRTCTAWSCTLPKVQGWFSYSRKHLGYVLPAFPSRRLHRHTQCPHKHT 131
L P +++L +SR + W+ +P V+G+ SR+ + R H CP H
Sbjct: 62 LSIPGTNALRHSSRNSSRWAKPMPFVEGFQVSSRQGMSLFRKHGNDYRSHSGNDCPGTHE 121
Query: 130 VGLEPYVSSN 101
+ Y+ +N
Sbjct: 122 EAM--YMGNN 129
>08_01_0189 +
1578935-1578950,1579227-1579390,1579493-1579605,
1579850-1580399,1580514-1580813,1581093-1581133,
1581359-1581606,1581983-1582086,1582177-1582323
Length = 560
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 193 RNPDVSWNKKTNPEPWEEYRTKQYKFYSPTRDY 291
R +V WN + E E YR K+ P RD+
Sbjct: 526 RKYNVKWNDEVTAEDMEAYRMKRIHHDDPMRDF 558
>01_01_0910 + 7175107-7175319,7175448-7175588,7175696-7175866
Length = 174
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 249 VLFPRFRVGFLIPGNIWVTCCQPSQVEDCTG 157
V+ P FRV PG + + C P+ V D G
Sbjct: 45 VVMPGFRVSLAEPGRLVCSFCVPAAVADADG 75
>08_02_0146 -
13195691-13196658,13197613-13197809,13198002-13198479,
13199660-13199782,13200139-13200466
Length = 697
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = -3
Query: 310 LVTPPSSSLL*ASRTCTAWSCTLPKVQGWFSYSRKHLGYVLPAFPSRRLHRHTQCPHKHT 131
L P +++L +SR + W+ +P V+G+ SR+ + + H CP H
Sbjct: 62 LSIPGTNALRHSSRNSSRWAKPMPFVEGFQVSSRQGMSLFRKHGNDCKSHSGNDCPGTHE 121
Query: 130 VGLEPYVSSN 101
+ Y+ +N
Sbjct: 122 EAM--YMGNN 129
>10_08_0608 + 19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 199 PDVSWNKKTNPEPWEEYRTKQYKFYSPTRDYSKEESPAPKY*SVLLH 339
PD ++T+P P E+ TK+ P +D S+ S AP+ + H
Sbjct: 1215 PDTQDFERTHPSPSTEHDTKE-----PLKDQSRSTSVAPEGSGTMAH 1256
>01_06_1729 +
39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 220 SYSRKHLGYVLPAFPSRRLHRHTQCPHKHTVGLEPYVSSNLQYSIP 83
S++ H P+FP+R + CP + GL+P S+ +Y++P
Sbjct: 76 SFAALHPDDRSPSFPTRH-QQVGLCPRRTRPGLKPVWRSSHRYTLP 120
>11_06_0385 +
22998153-22998329,22999642-22999823,23004817-23005189,
23005391-23005627,23006380-23006616
Length = 401
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 255 GPVLFPRFRVGFLIP 211
GP +FP+ RVGFL P
Sbjct: 112 GPKIFPQQRVGFLTP 126
>11_06_0384 +
22990773-22990949,22991315-22991496,22992533-22992887,
22993124-22993426,22994077-22994313
Length = 417
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 255 GPVLFPRFRVGFLIP 211
GP +FP+ RVGFL P
Sbjct: 112 GPKIFPQRRVGFLTP 126
>05_03_0211 +
10236867-10237075,10238036-10238270,10238433-10238602,
10240324-10240466,10240590-10240767,10241441-10242008,
10243001-10243113,10244521-10244764,10245201-10245278,
10246500-10246727
Length = 721
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 33 ILVQTAIIIVFLYVQDAGIEYCKFEET*GSNPTVCLCGHWVCRC 164
+ VQ AI V VQDA I K ++P+ W+C C
Sbjct: 587 LAVQNAISKVEELVQDANIVLLKIRALLLASPSQFYRNEWICFC 630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,469,654
Number of Sequences: 37544
Number of extensions: 247455
Number of successful extensions: 694
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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