Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F10
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    29   0.96 
Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical p...    28   2.2  
Z82268-10|CAB05202.1|  972|Caenorhabditis elegans Hypothetical p...    28   2.2  
AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical ...    28   2.2  
AL021476-1|CAA16317.1|  972|Caenorhabditis elegans Hypothetical ...    28   2.2  
AF068716-11|AAC17745.2|  174|Caenorhabditis elegans Hypothetical...    27   6.8  
M96145-1|AAA28057.1|  562|Caenorhabditis elegans elastase protein.     26   9.0  
AF016680-3|AAB66165.2|  562|Caenorhabditis elegans Abnormal gut ...    26   9.0  

>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
           protein 5, isoforma protein.
          Length = 1544

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 209 ETSGLRVASLPK*KTAPAHPMPTQT 135
           ETS + + SLP  K AP  P+PTQ+
Sbjct: 666 ETSQVELPSLPTTKMAPPQPVPTQS 690


>Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1c protein.
          Length = 1210

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 154 CAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTKQYKFYSPTRDYSKEESP 309
           C GA+F    L  R PDV+W   T    ++   +   K  S T ++ K   P
Sbjct: 691 CFGAIFMY--LLHRKPDVNWGSSTQAHSYKNALSAMIKL-STTEEHVKNYRP 739


>Z82268-10|CAB05202.1|  972|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1a protein.
          Length = 972

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 154 CAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTKQYKFYSPTRDYSKEESP 309
           C GA+F    L  R PDV+W   T    ++   +   K  S T ++ K   P
Sbjct: 691 CFGAIFMY--LLHRKPDVNWGSSTQAHSYKNALSAMIKL-STTEEHVKNYRP 739


>AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1c protein.
          Length = 1210

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 154 CAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTKQYKFYSPTRDYSKEESP 309
           C GA+F    L  R PDV+W   T    ++   +   K  S T ++ K   P
Sbjct: 691 CFGAIFMY--LLHRKPDVNWGSSTQAHSYKNALSAMIKL-STTEEHVKNYRP 739


>AL021476-1|CAA16317.1|  972|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1a protein.
          Length = 972

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 154 CAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTKQYKFYSPTRDYSKEESP 309
           C GA+F    L  R PDV+W   T    ++   +   K  S T ++ K   P
Sbjct: 691 CFGAIFMY--LLHRKPDVNWGSSTQAHSYKNALSAMIKL-STTEEHVKNYRP 739


>AF068716-11|AAC17745.2|  174|Caenorhabditis elegans Hypothetical
           protein F26D11.1 protein.
          Length = 174

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 244 LPKVQGWFSYSRKHLGYVLPAFPSRRLHRHTQCPH 140
           LP +Q   +Y+R + GYV+     +R +R   C H
Sbjct: 59  LPWLQAINNYARLNQGYVIACSALKRRYRSILCEH 93


>M96145-1|AAA28057.1|  562|Caenorhabditis elegans elastase protein.
          Length = 562

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 145 GIGCAGAVFYLGRLATRNP--DVSWNKKTNPEPWEE-YRTKQYK 267
           GI   GA  +L     + P  D+ + K   P+PWE+ Y   QY+
Sbjct: 29  GIEYEGAEVFLAIPFAKPPVDDLRFEKPVAPDPWEDVYPATQYR 72


>AF016680-3|AAB66165.2|  562|Caenorhabditis elegans Abnormal gut
           esterase protein 1 protein.
          Length = 562

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 145 GIGCAGAVFYLGRLATRNP--DVSWNKKTNPEPWEE-YRTKQYK 267
           GI   GA  +L     + P  D+ + K   P+PWE+ Y   QY+
Sbjct: 29  GIEYEGAEVFLAIPFAKPPVDDLRFEKPVAPDPWEDVYPATQYR 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,833,620
Number of Sequences: 27780
Number of extensions: 213691
Number of successful extensions: 601
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)