Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_F09
(330 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 47 8e-07
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 34 0.005
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.034
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 30 0.10
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 0.14
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.14
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.18
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 28 0.42
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 28 0.42
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 27 0.56
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 0.73
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 0.97
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 1.3
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 1.7
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 1.7
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 2.2
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 2.2
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 2.2
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 3.0
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 25 3.0
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 3.0
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 24 5.2
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 24 5.2
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 5.2
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 24 6.8
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 24 6.8
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 24 6.8
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 24 6.8
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 23 9.0
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom... 23 9.0
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 23 9.0
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 46.8 bits (106), Expect = 8e-07
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +1
Query: 187 P*RDDDRKLFVGGLSWETSDKELRDHFSAYGEI 285
P +D K+F+GGL+WET+D LRD+F +GE+
Sbjct: 157 PFNREDGKMFIGGLNWETTDDSLRDYFEQFGEV 189
Score = 28.3 bits (60), Expect = 0.32
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +1
Query: 208 KLFVGGLSWETSDKELRDHFSAYGEI 285
K+FVGG+ + +++E R+ F+ +G +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRV 273
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 34.3 bits (75), Expect = 0.005
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1
Query: 211 LFVGGLSWETSDKELRDHFSAYGEI 285
LFVG L +ET+D +L++HF G+I
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.5 bits (68), Expect = 0.034
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 196 DDDRKLFVGGLSWETSDKELRDHFSAYGEI 285
D+ ++VG + SD+E+ HFS YG++
Sbjct: 14 DESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 29.9 bits (64), Expect = 0.10
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 181 KPP*RDDDRKLFVGGLSWETSDKELRDHFSAYGEI*EH*CKDRSK 315
+PP LF+ G+ E +D ++R HF YG + C R+K
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVCSHRAK 248
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 0.14
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 211 LFVGGLSWETSDKELRDHFSAYGEI 285
++VG L W TSD+ L D F+ G +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSV 306
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.5 bits (63), Expect = 0.14
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 193 RDDDRKLFVGGLSWETSDKELRDHFSAYGEI 285
RDD L V LS +T ++ELRD F +G I
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGI 228
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.18
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 154 EEMDRITVPKPP*RDDDRKLFVGGLSWETSDKELRDHFSAYGEI 285
E +IT P ++ +FVG LSW D+ L F YG I
Sbjct: 247 ERPAKITKPSQD-SNETCTVFVGRLSWNVDDQWLGQEFEEYGTI 289
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 27.9 bits (59), Expect = 0.42
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 211 LFVGGLSWETSDKELRDHFSAYGEI 285
+FVGGLS S++EL+ F +GEI
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI 329
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.9 bits (59), Expect = 0.42
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 184 PP*RDDDRKLFVGGLSWETSDKELRDHFSAYGEI 285
P + DD ++FVG LS T E+R F G +
Sbjct: 37 PAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTV 70
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 27.5 bits (58), Expect = 0.56
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 202 DRKLFVGGLSWETSDKELRDHFSAYGEI 285
+++++VGGLS +L FS +G +
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSV 31
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 27.1 bits (57), Expect = 0.73
Identities = 12/52 (23%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 136 EIRSTVEEMDRITVPKPP*RD--DDRKLFVGGLSWETSDKELRDHFSAYGEI 285
++R+ E++D T ++ D + ++VG + + + +EL+ HF++ G +
Sbjct: 30 KLRAMQEQLDNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSV 81
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 0.97
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 236 KHQTRNYVITSVLTVRFESINVKTDPNT 319
K+Q RN+ + V T+ F + ++T PNT
Sbjct: 272 KYQYRNFFMAQVKTLSFLAYILRTHPNT 299
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 1.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 178 PKPP*RDDDRKLFVGGLSWETSDKELRDHFSAYGEI 285
P+PP ++FV +S + ++LR HF ++GE+
Sbjct: 90 PEPP-----TQVFVSNISPLVTSEQLRYHFKSFGEV 120
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 1.7
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +1
Query: 172 TVPKPP*RDDDRKLFVGGLSWETSDKELRDHFSAYGEI*EH*CKDRSKHG 321
T+P + R LF+GG++ + LR F +G + +HG
Sbjct: 395 TIPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHG 444
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 1.7
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +1
Query: 193 RDDDRK--LFVGGLSWETSDKELRDHFSAYGEI 285
+++DRK LFVG L ++S + L+ HF G++
Sbjct: 86 KNNDRKVILFVGNLPKDSSVETLQLHFKRAGQV 118
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 2.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 202 DRKLFVGGLSWETSDKELRDHFSAYGEI 285
+ +LFVG + + + +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 2.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 211 LFVGGLSWETSDKELRDHFSAYGEI 285
LF+ L E D+ L+ FSA+G I
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTI 390
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 2.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 205 RKLFVGGLSWETSDKELRDHFSAYGEI*EH 294
R +F+G L +KE+ + F +G+I EH
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKI-EH 327
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 257 RNSLSDVSQLNPPTKSFLSSSRHGGFGTVILSISSTVL 144
R S+ + N P FL S+R GG G +++ + ++
Sbjct: 746 RTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVII 783
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 3.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 239 HQTRNYVITSVLTVRFESINVKTDPNTG 322
+QT I++V T FES+ + DPNTG
Sbjct: 139 YQTDTKKISAVSTY-FESMPYRVDPNTG 165
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 233 GKHQTRNYVITSVLTVRFESINVKTD 310
GK+ YV T+ + E NVKTD
Sbjct: 41 GKNDNGEYVFTNKEDINMEDPNVKTD 66
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 24.2 bits (50), Expect = 5.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 321 PVFGSVFTLMLSNLTVSTEVIT*FLV*CFPA*PANKKFSVIIASR 187
P++ S + L+L++L S V PA+ KFSVI+A +
Sbjct: 564 PIYNSTYELILASLNTSEPV------------PADAKFSVIVAKK 596
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 24.2 bits (50), Expect = 5.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 236 SQLNPPTKSFLSSSRHGGF 180
++L+P T+ LS+SRH F
Sbjct: 254 NRLSPSTQPLLSNSRHSSF 272
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 24.2 bits (50), Expect = 5.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = -2
Query: 245 SDVSQLNPPTKSFLSSSRHG---GFGTVILSISSTV 147
+D QLNP + SS +HG VILSI +
Sbjct: 634 NDPLQLNPQSDDSTSSPKHGKSRSIDEVILSIKDVI 669
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 23.8 bits (49), Expect = 6.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 138 NSEHGGGDGQDNSAEAPVT 194
N HGG +G + A+ P+T
Sbjct: 661 NGRHGGSNGNISGAKTPMT 679
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 23.8 bits (49), Expect = 6.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 211 LFVGGLSWETSDKELRDHFSAYGEI 285
++VG LS+ T+++++ FS GEI
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 23.8 bits (49), Expect = 6.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 172 TVPKPP*RDDDRKLFVGGLSWETSDKELRDHFS 270
T+ KP +D + GLS TS++ L H S
Sbjct: 416 TIQKPAEKDAKAERKKSGLSSSTSEESLNRHIS 448
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 23.8 bits (49), Expect = 6.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 225 PANKKFSVIIASRGLRHCYPVHLLHR 148
PA+ K +++ RGL H + +LHR
Sbjct: 107 PAHIKSWMVMLLRGLHHIHSRFILHR 132
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 211 LFVGGLSWETSDKELRDHFSAYGEI 285
LF+ LS++ + +E+ D F YG +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPV 38
>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 265 SDHVIPCLMFPSLTRQQKVFCHH 197
SD I CL +L R +F HH
Sbjct: 220 SDSAIQCLDIVALLRAFSLFAHH 242
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 23.4 bits (48), Expect = 9.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 211 LFVGGLSWETSDKELRDHFSAYGEI 285
LFVG L ++ L D FSA G++
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQL 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,317,304
Number of Sequences: 5004
Number of extensions: 23134
Number of successful extensions: 68
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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