Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F08
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    29   0.35 
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    28   1.1  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    28   1.1  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   4.3  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   4.3  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   5.7  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    25   5.7  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 70  TGNRLEHAVLTHIQHVP*FPCPLPALSYHHPSPSYRRQLSTS 195
           TG     A+   +   P  P P PA+ +H P P  R  +S S
Sbjct: 715 TGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPS 756


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 145 LSYHHPSPSYRRQLSTSERDRCLQSWLVETNAR 243
           L+YH P   ++   ST ++D CL    +ETN+R
Sbjct: 485 LNYHGPDVPWQELRSTKDKDYCLS---LETNSR 514


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +2

Query: 2   QRQISTKARKEPVHKKSAAVGRTPVTGWNTQFLPTFSTCHSFPAPYRPYPIIIHLPLTGV 181
           Q+Q STK     V+ ++ AV +TP T +N+      ST +++    +     I +P+ G 
Sbjct: 17  QKQ-STKRTNPCVYLEAKAVEQTPATEFNSILQEIISTEYNYSVDLKKTLNEIIMPIEGQ 75

Query: 182 SLVR 193
           S+ R
Sbjct: 76  SMER 79


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 130 CPLPALSYHHPSPSYRRQLSTSERD 204
           C LPA  Y HP   Y R++    RD
Sbjct: 179 CRLPASKYDHPRSHYIRRICEIIRD 203


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +3

Query: 270 KSYDVSASMKKPVTVST--SKYPTT 338
           +SY  S++   P+T+ST  S +PTT
Sbjct: 515 QSYSTSSNFTTPITISTSLSSFPTT 539


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 237 CKTATKANFACKSYDVSASMKKPVTVSTSKYPT 335
           C + +  NF+   Y   + M++P+T+S S  P+
Sbjct: 396 CISPSGTNFSPSCYSPESLMQQPLTLSPSSIPS 428


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 309 TVSTSKYPTTKKEEQKKDYGAWGSIYKDKKTF 404
           TV  S+Y +  +E +    G +GS+YK +  F
Sbjct: 214 TVQRSRYASDFEELELLGKGGYGSVYKARNKF 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,191
Number of Sequences: 5004
Number of extensions: 41172
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)