Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F08
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0031 + 240908-241091,241199-241977                               29   2.5  
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321...    29   3.3  
02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356     28   4.4  
01_04_0144 - 16703232-16704049,16704148-16704331                       28   4.4  
08_02_1423 + 26975466-26975508,26976253-26976365,26976505-269765...    28   5.8  

>01_01_0031 + 240908-241091,241199-241977
          Length = 320

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 324 KYPTTKKEEQKKDYGAWGSIYKDKKTFTEMHL 419
           KYPT  +  +  + G W +  KDK+ F + H+
Sbjct: 81  KYPTGMRTNRATEAGYWKATGKDKEIFRDHHM 112


>02_03_0180 -
           16031366-16031445,16031950-16032022,16032148-16032186,
           16032434-16032715,16032790-16032948,16033034-16033390,
           16033482-16033622,16033919-16034045,16034121-16034263,
           16034740-16034917,16035019-16035552,16035628-16035812,
           16036551-16036637,16036710-16036850,16036896-16037175,
           16037944-16038020,16038326-16039138,16039292-16039801,
           16039926-16040056,16040192-16040246,16040364-16040564,
           16040640-16040909,16041103-16041184,16041271-16041434,
           16041532-16041690,16041762-16042083,16042158-16042544,
           16042811-16042999,16043233-16043317,16043458-16043753,
           16043862-16043965,16044484-16044513,16044602-16044817,
           16044923-16045540,16045718-16045993,16046619-16046762,
           16046854-16046962,16047291-16047475,16047557-16047670,
           16048348-16048479,16048929-16049249,16049424-16049891,
           16054482-16054547,16054691-16054828,16054917-16055015,
           16057098-16057194,16057661-16057761,16057858-16058085,
           16059175-16059381,16059451-16059571,16059921-16059988,
           16060148-16060213,16060396-16060509,16060949-16061300,
           16063571-16063663,16063764-16063922,16064224-16064287,
           16064385-16064577,16064673-16064710,16065510-16065645,
           16065726-16065914,16065994-16066095,16067660-16067777,
           16067861-16067964,16070338-16070346,16071428-16071475,
           16071581-16071676,16072430-16072533,16073964-16074045,
           16076573-16076601,16076708-16076963
          Length = 4246

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 8   QISTKARKEPVHKKSAAVGRTPVTGWNTQFLPT 106
           ++ T   KE +HKK A+  R    GWN+  LP+
Sbjct: 582 KVETVKSKEILHKKGASKRRWWTFGWNSAELPS 614


>02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356
          Length = 444

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 52  CSRRANTGNRLEHAVLTHIQHVP*FPCPLPALSYHHPSPSY 174
           C      G R+ HAVL      P    P+P +  H P P +
Sbjct: 66  CFGSQKNGRRISHAVLVPEPLPPRTDAPMPEIPIHPPPPVF 106


>01_04_0144 - 16703232-16704049,16704148-16704331
          Length = 333

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 324 KYPTTKKEEQKKDYGAWGSIYKDKKTFTEMHL 419
           KYPT  +  +  + G W +  KDK+ F   H+
Sbjct: 81  KYPTGMRTNRATEAGYWKATGKDKEIFRNHHM 112


>08_02_1423 +
           26975466-26975508,26976253-26976365,26976505-26976561,
           26976607-26976801,26976912-26977060,26977145-26977307,
           26977865-26977957,26978075-26978158,26978865-26979004,
           26979093-26979192
          Length = 378

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 98  RTACSNRLPVFARRLHFSCAQVLCE 24
           +T C   L VF R+LH  CAQVL E
Sbjct: 285 KTDCMYALLVF-RKLHLKCAQVLLE 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,310,741
Number of Sequences: 37544
Number of extensions: 287173
Number of successful extensions: 840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)