Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F08
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr...    30   0.98 
Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U29612-5|AAA68800.2|  409|Caenorhabditis elegans Inositol polyph...    29   1.7  
AF411588-1|AAL72637.1|  400|Caenorhabditis elegans inositol poly...    29   1.7  

>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical protein
            C56E6.6 protein.
          Length = 1102

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +2

Query: 5    RQISTKARKEPVHKKSAAVGRTPVTGWNTQFLPTFSTCHSFPAPYRPY---PIIIHLPLT 175
            +QIS+ A +  +H K   V   P+T    + +      ++ P   RPY    I+ +LP  
Sbjct: 833  KQISSMAFEPLIHLKQLNVSANPITHLTNEHIQQLYKLYNIPDMARPYQISSILSNLPPL 892

Query: 176  GVSLVRVKET 205
                V +KE+
Sbjct: 893  HTIYVDIKES 902


>Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical
           protein C12D8.5 protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 73  GNRLEHAVLTHIQHVP*FPCPLPALSYHHPS 165
           G R EH V+ HIQ +P     +  L+Y H S
Sbjct: 214 GGRTEHEVMCHIQEIPENGADIAHLNYLHKS 244


>U29612-5|AAA68800.2|  409|Caenorhabditis elegans Inositol
           polyphosphate 5-phosphataseprotein 5 protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 258 NFACKSYDVSASMKKPVTVSTSKYPTTKKEEQKKDYGAWGSIYKDKKTFTE 410
           NF  K Y+   S K+ VT     YP   K +  KD+  W SI   +K + +
Sbjct: 111 NFHTKKYEQLTSPKEVVTHGLENYPYVVKHKFPKDF--WPSIKWGRKGYMQ 159


>AF411588-1|AAL72637.1|  400|Caenorhabditis elegans inositol
           polyphosphate 5-phosphatasetype I protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 258 NFACKSYDVSASMKKPVTVSTSKYPTTKKEEQKKDYGAWGSIYKDKKTFTE 410
           NF  K Y+   S K+ VT     YP   K +  KD+  W SI   +K + +
Sbjct: 111 NFHTKKYEQLTSPKEVVTHGLENYPYVVKHKFPKDF--WPSIKWGRKGYMQ 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,259,415
Number of Sequences: 27780
Number of extensions: 245258
Number of successful extensions: 810
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)