Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F07
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   4.0  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    25   5.2  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.9  
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    25   9.1  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    25   9.1  

>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 419 YITIALKKPQYYSYKTIAILDICITNQFRNYRDLSTVYVQLTEKK 285
           Y T++    +YYSY+ +  LD C +     +RD+    V +  KK
Sbjct: 129 YPTLSDYDIRYYSYELLKALDFCHSRGIM-HRDVKPHNVMIDHKK 172


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 225 NTKKQTDGKTLLLIICKDYHFFFCQLYINGRQIAVISKL 341
           N +  TDGK LLL    D+H+     Y     + V SK+
Sbjct: 206 NVEFSTDGKYLLLTTGNDFHYVI-DAYSGSELLRVPSKV 243


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 165 RGESRRHKLDK--NRFNSYHFKNTKKQTDGKTLLLIICKDYHFF 290
           R +   HK++K     N     N+K   D +TL L++ +DY  F
Sbjct: 213 RKDGPYHKVEKLLKSANIRSSLNSKTFNDFRTLFLLLIRDYSLF 256


>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 464 YYQIIFMLSFMET*KYITIALKKP 393
           YY I+FML  +E   ++ ++L  P
Sbjct: 4   YYMIVFMLLMVEIVSFVILSLPLP 27


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 176 ALPAFLMTCAYNISFI 129
           A+PAFL TC  N+ ++
Sbjct: 99  AIPAFLYTCQNNLQYV 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,734
Number of Sequences: 5004
Number of extensions: 43876
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)