Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F07
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-20|CAA20952.1|  325|Caenorhabditis elegans Hypothetical...    34   0.072
AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine re...    32   0.29 
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    30   1.2  
Z50006-5|CAA90300.1|  301|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U97189-7|AAK68257.3|  782|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AL021504-1|CAA16428.3|  325|Caenorhabditis elegans Hypothetical ...    28   3.6  

>AL031627-20|CAA20952.1|  325|Caenorhabditis elegans Hypothetical
           protein Y102A5C.32 protein.
          Length = 325

 Score = 33.9 bits (74), Expect = 0.072
 Identities = 29/119 (24%), Positives = 54/119 (45%)
 Frame = -2

Query: 464 YYQIIFMLSFMET*KYITIALKKPQYYSYKTIAILDICITNQFRNYRDLSTVYVQLTEKK 285
           YY ++F +    T   +T  +K   YY    +  +  C  +Q+ N   + T Y  L    
Sbjct: 46  YYLLLFQVVCTATDLNLTTFMKFLPYYPINALGTIGYC--SQWFN---MPTHYCMLV--- 97

Query: 284 MIIFTYY*KQCFSVCLFLCVFKMITIESIFI*LVPAALPAFLMTCAYNISFIPNVKKQI 108
            +I TYY  +C ++C F    K+ ++ ++ +  V A +   L+  A+ +   P +  QI
Sbjct: 98  CLILTYYESECLALCFFQKHQKIASVIAVHVFPVYAKIIGALIFLAFPV--YPMIAMQI 154


>AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein64 protein.
          Length = 342

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +2

Query: 338 TGWLYI-YLGWL*FYSYSIVVFLRLWLYI 421
           TGW +I Y+ ++ FYS+ +++FL + LYI
Sbjct: 194 TGWEWINYIPYVPFYSFHVLIFLSVLLYI 222


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
           (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 372 YSHPRYMYNQPVSKLPRFVYRLCTVDRKKNDNLYIL 265
           ++ PR  YNQ VS    F Y++ T +R      Y+L
Sbjct: 54  FARPRGWYNQSVSSPSEFFYQILTTERGTRRIAYVL 89


>Z50006-5|CAA90300.1|  301|Caenorhabditis elegans Hypothetical
           protein T07C5.4 protein.
          Length = 301

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 326 RDLSTVYVQLTEKKMI--IFTYY*KQCFSVCLFLCVFKMI 213
           RDL   Y ++    ++   F  + K+ F++C FLCVF ++
Sbjct: 232 RDLIASYQKVYTSSLLELCFKTHKKKAFTICRFLCVFNLV 271


>U97189-7|AAK68257.3|  782|Caenorhabditis elegans Hypothetical
           protein C48B6.8 protein.
          Length = 782

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -2

Query: 248 SVCLFLCVFKMITIESIFI*LVPAAL-PAFLMTCAYNISFIPNVKKQINEGKLVLLFLLA 72
           +V + +C+++ + I +  +    A + P  L+ C+YN S+   +     +GK+V+ +L  
Sbjct: 270 AVGMAMCLYRSLLINNKLVWNCNAQMSPVALLVCSYNKSYENTITMMAPDGKVVVGYLGT 329

Query: 71  EKMYIRV 51
           E    R+
Sbjct: 330 EPNLYRL 336


>AL021504-1|CAA16428.3|  325|Caenorhabditis elegans Hypothetical
           protein Y61B8B.1 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/77 (23%), Positives = 32/77 (41%)
 Frame = -2

Query: 464 YYQIIFMLSFMET*KYITIALKKPQYYSYKTIAILDICITNQFRNYRDLSTVYVQLTEKK 285
           YY ++F +    T   +T  +K   YY    +  +       F  + ++ T Y  L    
Sbjct: 46  YYLLLFQVVCTATDLNLTTFMKFLPYYPINALGTI-----GYFSQWFNMPTHYCMLVS-- 98

Query: 284 MIIFTYY*KQCFSVCLF 234
            + F YY  +C ++C F
Sbjct: 99  -LTFIYYESECLALCFF 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,446,047
Number of Sequences: 27780
Number of extensions: 239803
Number of successful extensions: 568
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)