Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F05
         (197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   1.8  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    23   4.2  
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom...    23   4.2  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    23   4.2  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   4.2  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    23   4.2  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    23   7.4  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    23   7.4  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    22   9.7  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 84  RMVASHH--RPLGRVHEPNVRNCGSSRTSC 1
           R+V +H     LG +H+ N ++CG    +C
Sbjct: 224 RLVVAHEIGHILGLIHDCNKKSCGDHSEAC 253


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 175  PPDSRGSTVSISLPDSARLASALEAFRHNP 86
            P D +  T S     S+ L   L  F+H+P
Sbjct: 1010 PEDQKRKTFSFDTSKSSSLLKKLYRFKHDP 1039


>SPCC1442.17c ||SPCC285.02c|DUF292 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 271

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 58  RPVVRSYHPRDYA*TPLMPKPA*PNPATICSLWSPESRE 174
           + ++R+Y P DY        P+     T+ +L S E+RE
Sbjct: 158 KELIRTYFPNDYPKEANKDIPSSAEADTMLNLESSENRE 196


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 139 LPDSARLASALEAFRHNPAD 80
           LPD  RL S + A R  PAD
Sbjct: 748 LPDLERLISRVHAGRSKPAD 767


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 145 ISLPDSARLASALEAFRHNP 86
           ++LP SA+L   ++A ++NP
Sbjct: 309 VALPQSAKLFQKVKALKNNP 328


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 64  VVRSYHPRDYA*TPLMPKPA*PNPATICSLWS 159
           ++  + PR ++ T    K A P+P   CS++S
Sbjct: 170 IIPLFFPRAWSPTVKFSKVARPSPEQTCSIFS 201


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 44  CTRPSGRWCEATIRGIMPE 100
           CT   GRWC       +PE
Sbjct: 262 CTTLDGRWCHTICAIAIPE 280


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = -2

Query: 196 VKSLC-LEPPDSRGSTVSISLPDSARLASALEAFRHNP 86
           ++  C + PP   G +  I+ PD    AS +E     P
Sbjct: 474 IRVFCRVRPPLGDGESAQIAFPDQNSEASTIEIVAQAP 511


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 5   EVREEPQFRTFGSC 46
           E  EEP +R FG C
Sbjct: 280 EAEEEPLWRYFGDC 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 805,513
Number of Sequences: 5004
Number of extensions: 12383
Number of successful extensions: 30
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)