Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F05
         (197 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0407 + 17345382-17345579,17345711-17346235                       27   2.1  
08_02_1485 - 27466761-27467753                                         27   2.1  
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    27   2.8  
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816...    27   2.8  
02_02_0240 + 8196140-8198248,8198381-8198650                           26   3.7  
05_01_0314 - 2466617-2467060                                           25   6.4  
02_01_0444 + 3212646-3212686,3213093-3213225,3213467-3213570,321...    25   6.4  
07_03_0626 + 20060013-20060273,20061017-20061274                       25   8.5  
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373...    25   8.5  

>09_04_0407 + 17345382-17345579,17345711-17346235
          Length = 240

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 110 CRSQPSRIRQRYAHCGAP 163
           C+S  S IR+ YAHC  P
Sbjct: 19  CKSLSSLIRETYAHCHVP 36


>08_02_1485 - 27466761-27467753
          Length = 330

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 175 PPDSRGSTVSISLPDSARLASALEAFRHNPA 83
           PP + G  +S  +P  A LA++L  +  NPA
Sbjct: 39  PPSATGPVLSRDVPLDASLATSLRLYLPNPA 69


>10_06_0105 -
           10790092-10790323,10791092-10791234,10791322-10791429,
           10791796-10791903,10793133-10797686,10798347-10798461,
           10799597-10799724,10799843-10800043,10800158-10800227,
           10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 93  IIPRMVASHHRPLGRVHEPNVRNCGSSRT 7
           ++P   A+H   LGR H+ N +  GS+ T
Sbjct: 535 LVPPTNAAHQPSLGRDHDSNKKTSGSAGT 563


>04_03_0092 +
           11079185-11079589,11081319-11081409,11081507-11081612,
           11081694-11081976,11082062-11082210,11083582-11083735,
           11083837-11084793
          Length = 714

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 3   TRYERNRSFGHLVHALGRAAGGAKLPSAGL 92
           T  ERN  FG   HA+G  + G  L S GL
Sbjct: 450 TPEERNIRFGVREHAMGAISNGIALHSPGL 479


>02_02_0240 + 8196140-8198248,8198381-8198650
          Length = 792

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 87 PRMVASHHRPLGRVHEP 37
          P  VA+H RPLG +H P
Sbjct: 36 PPTVATHTRPLGIIHPP 52


>05_01_0314 - 2466617-2467060
          Length = 147

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 49  SAERPVVRSYHPRDYA*TPLMPK 117
           +A+RP   SYHP + A  PL  K
Sbjct: 114 AADRPACASYHPAEDAELPLNQK 136


>02_01_0444 +
           3212646-3212686,3213093-3213225,3213467-3213570,
           3214360-3214504,3214592-3214732,3214835-3216298
          Length = 675

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 193 KSLCLEPPDSRGSTVSISLPDSARLASALEAFR 95
           +S+ ++P  SRG  V  S+PD   LA+ + A R
Sbjct: 642 RSISMQPDKSRG-IVHPSMPDFDELAARISALR 673


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 141 RCRIRLGWLRH*RRSGIIP 85
           R   RLGWLR  R S ++P
Sbjct: 28  RAAARLGWLRPSRLSAVVP 46


>01_06_0823 +
           32234588-32234936,32236354-32237093,32237260-32237343,
           32237909-32239263,32240399-32240460,32240544-32241144,
           32241229-32241310,32241778-32241840
          Length = 1111

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 103 PLMPKPA*PNPATICSLWSPESREALNK 186
           P +P P  P P T+ +  SP   EA+ K
Sbjct: 45  PGVPPPPPPPPQTLAAAASPRPEEAVRK 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,114,058
Number of Sequences: 37544
Number of extensions: 113090
Number of successful extensions: 288
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)