Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F05
         (197 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC048251-1|AAH48251.1|  322|Homo sapiens ZDHHC12 protein protein.      31   0.68 
AL441992-6|CAI15406.1|  210|Homo sapiens zinc finger, DHHC-type ...    31   0.68 
AF091081-1|AAC72950.1|  303|Homo sapiens unknown protein.              29   3.7  
DQ438889-1|ABE66441.1|  244|Homo sapiens GLIS family zinc finger...    28   6.4  
DQ438888-1|ABE66440.1|  244|Homo sapiens GLIS family zinc finger...    28   6.4  
DQ438887-1|ABE66439.1|  244|Homo sapiens GLIS family zinc finger...    28   6.4  
DQ438886-1|ABE66438.1|  244|Homo sapiens GLIS family zinc finger...    28   6.4  
DQ438877-1|ABE66434.1|  930|Homo sapiens GLIS family zinc finger...    28   6.4  
AK128666-1|BAC87560.1|  167|Homo sapiens protein ( Homo sapiens ...    28   6.4  

>BC048251-1|AAH48251.1|  322|Homo sapiens ZDHHC12 protein protein.
          Length = 322

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 100 TPLMPKPA*PNPATICSLWSPESRE 174
           TP  P P  P PA++CS  SPE R+
Sbjct: 68  TPTPPTPVLPGPASLCSPASPELRQ 92


>AL441992-6|CAI15406.1|  210|Homo sapiens zinc finger, DHHC-type
           containing 12 protein.
          Length = 210

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 100 TPLMPKPA*PNPATICSLWSPESRE 174
           TP  P P  P PA++CS  SPE R+
Sbjct: 68  TPTPPTPVLPGPASLCSPASPELRQ 92


>AF091081-1|AAC72950.1|  303|Homo sapiens unknown protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 44  CTRPSGRWCEAT-IRGIMPERL*CRSQPSRIRQRYAHCGAPRVGRL 178
           C+RP+GRW + T +    P+ L    +PSR    +  C   R  RL
Sbjct: 170 CSRPAGRWGDLTMLPSPRPQLLPALRRPSRACCAWPTCSPHRPHRL 215


>DQ438889-1|ABE66441.1|  244|Homo sapiens GLIS family zinc finger 3
           transcript variant TS5 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -3

Query: 87  PRMVASHHRPLGRVHE--PNVRNCGSS 13
           PRMV+ HH P  R H   P    CGS+
Sbjct: 20  PRMVSGHHIPAIRAHSGTPGPSPCGST 46


>DQ438888-1|ABE66440.1|  244|Homo sapiens GLIS family zinc finger 3
           transcript variant TS4 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -3

Query: 87  PRMVASHHRPLGRVHE--PNVRNCGSS 13
           PRMV+ HH P  R H   P    CGS+
Sbjct: 20  PRMVSGHHIPAIRAHSGTPGPSPCGST 46


>DQ438887-1|ABE66439.1|  244|Homo sapiens GLIS family zinc finger 3
           transcript variant TS3 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -3

Query: 87  PRMVASHHRPLGRVHE--PNVRNCGSS 13
           PRMV+ HH P  R H   P    CGS+
Sbjct: 20  PRMVSGHHIPAIRAHSGTPGPSPCGST 46


>DQ438886-1|ABE66438.1|  244|Homo sapiens GLIS family zinc finger 3
           transcript variant TS2 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -3

Query: 87  PRMVASHHRPLGRVHE--PNVRNCGSS 13
           PRMV+ HH P  R H   P    CGS+
Sbjct: 20  PRMVSGHHIPAIRAHSGTPGPSPCGST 46


>DQ438877-1|ABE66434.1|  930|Homo sapiens GLIS family zinc finger 3
           transcript variant long T1 protein.
          Length = 930

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -3

Query: 87  PRMVASHHRPLGRVHE--PNVRNCGSS 13
           PRMV+ HH P  R H   P    CGS+
Sbjct: 20  PRMVSGHHIPAIRAHSGTPGPSPCGST 46


>AK128666-1|BAC87560.1|  167|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46826 fis, clone UTERU2014998. ).
          Length = 167

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 40  FMHSAERPVVRSYHPRDYA*TPLMPKPA*PNPATICSLW 156
           F  S++ P++R+YHP        + K     P+T C LW
Sbjct: 15  FTGSSQLPLLRAYHPLSTQEPMTIRKQNGSCPSTSCPLW 53


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,711,668
Number of Sequences: 237096
Number of extensions: 554962
Number of successful extensions: 1118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 76,859,062
effective HSP length: 44
effective length of database: 66,426,838
effective search space used: 1394963598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)