Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F05
         (197 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    27   1.8  
L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain pro...    27   1.8  
Z73422-5|CAE54882.1|  323|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z73422-4|CAA97770.1|  319|Caenorhabditis elegans Hypothetical pr...    25   7.4  

>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +1

Query: 67  VRSYHPRDYA*TPLMPKP--A*P--NPATICSLWSPES 168
           V +YHP  Y+  PLM KP    P  NPA I   ++P++
Sbjct: 102 VNNYHPEHYSSPPLMRKPDFRFPIINPALILPGFNPDT 139


>L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain
           protein protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 139 LPDSARLASALEAFRHNPADGSFXXXXXXXXX*TKCPKLRFLS 11
           LPD + ++S+L    HNP   ++          TK PKL  LS
Sbjct: 37  LPDDS-ISSSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLS 78


>Z73422-5|CAE54882.1|  323|Caenorhabditis elegans Hypothetical
           protein B0564.10b protein.
          Length = 323

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 139 LPDSARLASALEAFRHNPADGSFXXXXXXXXX*TKCPKLRFLS 11
           LP+ + ++S+L    HNP   ++          TK PKL  LS
Sbjct: 37  LPEHS-ISSSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLS 78


>Z73422-4|CAA97770.1|  319|Caenorhabditis elegans Hypothetical
           protein B0564.10a protein.
          Length = 319

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 139 LPDSARLASALEAFRHNPADGSFXXXXXXXXX*TKCPKLRFLS 11
           LP+ + ++S+L    HNP   ++          TK PKL  LS
Sbjct: 37  LPEHS-ISSSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLS 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,643,243
Number of Sequences: 27780
Number of extensions: 77636
Number of successful extensions: 220
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)