Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F04
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    27   2.3  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   3.1  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   5.4  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   5.4  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    25   9.5  
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    25   9.5  

>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -2

Query: 427 TEKQSTNSIS----GQKNDHYNVLESLN*KLVDNNSQIKLYELWYRLWKVNPVLLCNK 266
           T++ + N +S    G K  H    +S++  L D+ SQ++LY+  Y+L+K   + +  K
Sbjct: 723 TDENARNLLSKIPPGTKLPHMK--KSISKLLADHQSQVQLYQSCYKLFKNESISMAIK 778


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 442 VGEQHTEKQSTNSISGQKNDHYNVLESLN 356
           +G +H E   +++ SG+KN   N+ ES N
Sbjct: 536 MGNRHDEVVFSDTASGEKNTKLNIDESTN 564


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 439 LL*YVAFNSNDRFNDDCRVWK 501
           L+ YV+ NSND   +  RVWK
Sbjct: 12  LVEYVSHNSNDNDLEKLRVWK 32


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 292 VNPVLLCNKLSPGKLLNMNRH-VLKIGRSFA 203
           VNP ++  KL PG+ +++  H +L IG+  A
Sbjct: 194 VNPDIVVAKLRPGQEIDLEAHAILGIGQDHA 224


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 250 IYLDLIYYKVKRD*LSKVCTTIRIILFGSCYQLIFNSMILIHCNDHF 390
           + +  +YY + +  L K   TI   L  + YQL +N    +HCN  F
Sbjct: 100 VIMATMYYFIAKRFLMKSNDTI---LSSTDYQLEWNYCFDVHCNSFF 143


>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/57 (22%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -2

Query: 394 QKNDHYNVLESLN*-KLVDNNSQIKLYELWYRLWKVNPVLLCNKLSPGKLLNMNRHV 227
           +K+ +Y + + L+  K++D+ + +KLY++    +K +  ++ N    GKL +++  +
Sbjct: 111 KKDPYYYIRKELDVLKVLDHENVVKLYQVINSDYKDSLCMVLNYCPGGKLASVDHGI 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,250
Number of Sequences: 5004
Number of extensions: 27633
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)