Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F04
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374...    28   5.4  
04_01_0559 - 7175828-7176195,7176262-7176973,7178028-7178201,717...    27   9.5  

>09_02_0062 -
           3742857-3743045,3744641-3744916,3745933-3745992,
           3746554-3748102,3748183-3748418
          Length = 769

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 355 NSMILIHCNDHFFDH*WNLL 414
           N +IL HC+ H   H W+LL
Sbjct: 234 NCLILDHCSKHSLQHVWSLL 253


>04_01_0559 -
           7175828-7176195,7176262-7176973,7178028-7178201,
           7178814-7178891
          Length = 443

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 267 LLQSKTGLTFQSLYHNSYNFIWELLSTNF*FNDS 368
           L + + G++F+  +H  Y   W+ LST   F+DS
Sbjct: 105 LKEIEDGISFR-FFHKKYTLTWKSLSTLLGFHDS 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,728,643
Number of Sequences: 37544
Number of extensions: 146896
Number of successful extensions: 266
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)