Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F02
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...   182   3e-47
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    29   0.30 
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    29   0.52 
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   1.2  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   3.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   6.4  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   8.4  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    25   8.4  

>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score =  182 bits (443), Expect = 3e-47
 Identities = 76/137 (55%), Positives = 113/137 (82%)
 Frame = +2

Query: 89  MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 268
           M EAR  ++++LKK+L+AIK+L+T A FDC+DNGI LQAMD+SHV+LVS+ +++DGF+ Y
Sbjct: 1   MLEARFQQAALLKKLLDAIKELVTDANFDCNDNGISLQAMDSSHVALVSMLIKSDGFEPY 60

Query: 269 RCDRNISMGMNLGSMSKILKCAGDKDTVTMKAQDNADTVTFAFESPNQEQVSDYEMKLMN 448
           RCDRNI++G+NL ++SK+L+CA ++D VT+KA+D  + +   FES   +++SDY++KLM+
Sbjct: 61  RCDRNIALGINLNALSKVLRCAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMD 120

Query: 449 LDLEHLGIPETEYSCTI 499
           +D EHLGIP+ EY  TI
Sbjct: 121 IDQEHLGIPDIEYDATI 137


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 21/78 (26%), Positives = 34/78 (43%)
 Frame = +2

Query: 200  QAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKAQDNAD 379
            + +D+SH  LV     A  F+ YRC +  SMG+  G +  +     D+   ++       
Sbjct: 957  RGLDDSHEQLVDNDDEAAIFETYRCLK--SMGLRRGYVKDMKNPLADQ-RASLDESRETT 1013

Query: 380  TVTFAFESPNQEQVSDYE 433
            T +  FES +     D E
Sbjct: 1014 TASSKFESDDSVDTEDEE 1031


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
 Frame = +2

Query: 248 ADGFDKYRC--DRNISMGMNLGSMSKILKCAGDKDTVTMKAQDNADTVTF------AFES 403
           A   DK  C  D+N+ +G  L       K   D   V M   D  +   F      AF+ 
Sbjct: 416 ASNLDKNYCMFDKNVGLGFGLSRHKVTNKVQYDVPGVCMYIDDGLEYGLFRHAGDGAFKP 475

Query: 404 PNQEQVSDYEMKLMNLDLEHLGIPETE 484
               +  +YE + +  DLE +G+  T+
Sbjct: 476 ATNYENFEYEERFLIQDLEVIGVDTTK 502


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = -1

Query: 273 HLYLSNPSALRVSDTNDT*ELSIACSWIPLSSQSKVACVSRSLMAS 136
           HL   N S+L+VSD+  + +L  +  + P+S  S+++  + SLMA+
Sbjct: 599 HLKYGNTSSLQVSDSQSSIDLDSSFHY-PVSVDSQLSHSTGSLMAN 643


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 125 KKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVS 235
           K+V  +  D+LTQ T  C D+ +++++       L+S
Sbjct: 436 KEVPSSFTDILTQKTIPCKDHKLKIKSKSGLPKILIS 472


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 92  FEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQL 199
           FE    R   L +++    D L    FD D+N I++
Sbjct: 227 FEIPSTRPPSLDQLIHLFNDFLRHPVFDFDENAIEM 262


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 302 SSYP*ICFYRIYICQIHLL 246
           S YP + F R+Y+C I LL
Sbjct: 87  SPYPILLFTRLYMCLISLL 105


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 107 LRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNS 217
           LR++    VL+  KD++T      D + +   +MDN+
Sbjct: 206 LRNNHCSHVLKGHKDIITSLAISKDGSSLLSNSMDNT 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,453
Number of Sequences: 5004
Number of extensions: 37085
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)