Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F02
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1136 + 34369994-34370312,34370398-34370550,34370648-343707...   196   8e-51
02_01_0061 + 442288-442411,442445-445498,445630-446000                 28   4.8  
09_04_0639 - 19162501-19162878,19162974-19163126,19163366-191640...    27   6.4  
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047...    27   6.4  

>02_05_1136 +
           34369994-34370312,34370398-34370550,34370648-34370745,
           34371563-34371784
          Length = 263

 Score =  196 bits (478), Expect = 8e-51
 Identities = 84/137 (61%), Positives = 115/137 (83%)
 Frame = +2

Query: 89  MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 268
           M E RL++ S+LKKVLEAI++L+T A FDC   G  LQAMD+SHV+LV+L LR++GF+ Y
Sbjct: 1   MLELRLVQGSLLKKVLEAIRELVTDANFDCSGTGFSLQAMDSSHVALVALLLRSEGFEHY 60

Query: 269 RCDRNISMGMNLGSMSKILKCAGDKDTVTMKAQDNADTVTFAFESPNQEQVSDYEMKLMN 448
           RCDRN+SMGMNL +M+K+L+CAG+ D +T+KA D +DTVTF FESPNQ++++D+EMKLM+
Sbjct: 61  RCDRNLSMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVTFMFESPNQDKIADFEMKLMD 120

Query: 449 LDLEHLGIPETEYSCTI 499
           +D EHLGIP++EY   +
Sbjct: 121 IDSEHLGIPDSEYQAIV 137


>02_01_0061 + 442288-442411,442445-445498,445630-446000
          Length = 1182

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 345 SLSPAHLRIFDILPKFIPIDMFLSHLYLSNPSALRVSDTNDT*ELSIAC 199
           S++   +R+F   PKFIP+   L+   +S    L +SD  DT   ++ C
Sbjct: 47  SMNSKMIRLFAPFPKFIPL---LAVFIISCSLPLAISDDTDTDREALLC 92


>09_04_0639 -
           19162501-19162878,19162974-19163126,19163366-19164046,
           19164747-19164856,19165050-19165125
          Length = 465

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 334 STFKDFRHTTQVHTHRYVSIASIFVKSICS 245
           S F+D  H  Q+  HR+  + S+ +   CS
Sbjct: 350 SKFRDSSHMRQIQEHRHEHLKSVTIIGFCS 379


>02_05_0982 -
           33303500-33304011,33304091-33304208,33304606-33304726,
           33304811-33304877,33304968-33305102,33305186-33305297,
           33305852-33306009,33306177-33306300,33306406-33306542,
           33307284-33307403,33307878-33308025,33308674-33308931,
           33309090-33309127,33309232-33309674,33309761-33309845,
           33310063-33310123,33310277-33310453,33311611-33312408,
           33314394-33314693
          Length = 1303

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 317 KILKCAGDKDTVTMKAQDNADTVTFAFESPNQEQVSDYEMKLMNL 451
           +I KC  D+D +  +   N +TVT A  +   E++  YE KL  L
Sbjct: 285 QITKCLEDEDALMDQIHQNIETVTKA--AKVLEEMKIYEQKLKKL 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,591,577
Number of Sequences: 37544
Number of extensions: 217796
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)