Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F02
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...   112   2e-25
AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical...    31   0.47 
AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical...    30   0.82 

>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score =  112 bits (269), Expect = 2e-25
 Identities = 49/101 (48%), Positives = 73/101 (72%), Gaps = 1/101 (0%)
 Frame = +2

Query: 191 IQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKAQD 370
           + LQAMD+SHV+LVSL L    FD YRCDR I++G++L +MSK LKCA + DT  +K ++
Sbjct: 1   MSLQAMDSSHVALVSLKLEVGLFDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEE 60

Query: 371 N-ADTVTFAFESPNQEQVSDYEMKLMNLDLEHLGIPETEYS 490
           N  D++ F F  P +++  D  +K+M++D EHLGIP+ +Y+
Sbjct: 61  NEGDSIIFTFADPKRDKTQDVTVKMMDIDSEHLGIPDQDYA 101


>AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical
           protein Y38F1A.9 protein.
          Length = 108

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 22/88 (25%), Positives = 34/88 (38%)
 Frame = +2

Query: 233 SLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKAQDNADTVTFAFESPNQ 412
           SL +  DG   + C  N +    +    K  +  GD+    +K      TVT   ++P Q
Sbjct: 12  SLIIAPDGSVLFECICNANPQPTVKWFLKDKELTGDRYVSKIKKMVGKFTVTLHIKNPTQ 71

Query: 413 EQVSDYEMKLMNLDLEHLGIPETEYSCT 496
           E    Y++   N    H    +  Y CT
Sbjct: 72  EDQGVYKVTATNTHGSHSVEQQYIYKCT 99


>AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical
           protein Y73F8A.27 protein.
          Length = 169

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
 Frame = +2

Query: 224 SLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKAQDNADTVTFAFES 403
           S++ L +RA GF ++  +       N   M+  ++  GD +    K++D    +T+    
Sbjct: 3   SVLRLAMRAKGFSRFLAETQAFPVKNRHFMTSSVRKTGDFEYEDPKSEDEVVNITYVLRD 62

Query: 404 PNQE----QVSDYEMKLMN-LDLEHLGIPETEYSCT 496
             +     +V D  M L +  D+E  G  E   +C+
Sbjct: 63  GTERKIRGKVGDNVMFLAHRYDIEMEGACEASLACS 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,503,521
Number of Sequences: 27780
Number of extensions: 205378
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)