Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_F01
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 246 1e-65
07_01_0756 + 5819367-5820038,5820847-5821005 243 1e-64
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 62 2e-10
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 36 0.018
05_01_0214 - 1615519-1616775 34 0.097
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142... 32 0.30
03_05_0292 + 22846273-22846377,22847161-22847823 31 0.91
03_02_0261 - 6933962-6934513 31 0.91
09_04_0377 + 17086775-17088310 30 1.2
03_01_0031 + 292335-292844 30 1.2
04_03_0039 - 10024789-10025223 29 2.8
10_07_0161 - 13674631-13675433,13675793-13675862 29 3.7
06_03_0892 - 25713502-25714125,25714309-25715199 28 4.8
11_01_0395 + 2999855-2999920,3000605-3002191 28 6.4
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 27 8.5
10_02_0115 + 5445580-5445606,5446118-5446609 27 8.5
08_02_0707 - 20212190-20214592 27 8.5
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 27 8.5
02_04_0551 + 23801464-23801802 27 8.5
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 246 bits (602), Expect = 1e-65
Identities = 109/143 (76%), Positives = 131/143 (91%)
Frame = +2
Query: 161 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 340
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 341 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 520
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 521 IGKPHTVPCKVTGKCGSVTVRLI 589
IG+PHTVPCKVTGKCGSVTVR++
Sbjct: 157 IGQPHTVPCKVTGKCGSVTVRMV 179
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 243 bits (594), Expect = 1e-64
Identities = 109/143 (76%), Positives = 130/143 (90%)
Frame = +2
Query: 161 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 340
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 341 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 520
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159
Query: 521 IGKPHTVPCKVTGKCGSVTVRLI 589
IGKPHTVPCKVTGKCGSVTVR++
Sbjct: 160 IGKPHTVPCKVTGKCGSVTVRMV 182
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 62.5 bits (145), Expect = 2e-10
Identities = 37/71 (52%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +2
Query: 380 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 556
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 557 GKCGSVTVRLI 589
K GSVTVR++
Sbjct: 57 DKYGSVTVRMM 67
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +2
Query: 308 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 487
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 488 LPV 496
+ V
Sbjct: 231 VTV 233
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 61 WRFP-RRLWIPWWRQRSWRPTWSWSRTRARPWPWQGRP 171
W F RR WIPW +R+ + WS S T R W Q RP
Sbjct: 184 WSFEWRRGWIPWEARRASKSAWSQSSTGTRKW-MQYRP 220
>05_01_0214 - 1615519-1616775
Length = 418
Score = 33.9 bits (74), Expect = 0.097
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 158 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVH 54
HGHG DHDH G D HH G+ H H
Sbjct: 190 HGHGHGHSHDHDH-GGSDHDHHHHEDQEHGHVHHH 223
>05_01_0197 -
1417672-1417899,1418921-1418974,1419267-1419552,
1421768-1422291
Length = 363
Score = 32.3 bits (70), Expect = 0.30
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 55 WTWRFPRRLWIPWWRQRSWRP 117
W WR P RL W R RSW P
Sbjct: 140 WLWRRPSRLLSKWRRGRSWAP 160
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 30.7 bits (66), Expect = 0.91
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 97 RQRSWRPTWSWSRTRAR 147
R+RSWR WSW R R R
Sbjct: 157 RRRSWRRQWSWRRRRRR 173
>03_02_0261 - 6933962-6934513
Length = 183
Score = 30.7 bits (66), Expect = 0.91
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 97 RQRSWRPTWSWSRTRAR 147
R+RSWR WSW R R R
Sbjct: 116 RRRSWRRQWSWRRRRRR 132
>09_04_0377 + 17086775-17088310
Length = 511
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +1
Query: 61 WRFPRRLWIPWWRQRSWRPTWSWSRTRARPWPWQGRPERVGASHQAWS 204
+R RR W P+ R R W+R R P P +G GA AWS
Sbjct: 62 YRDRRRQWSPYHRDRGRDVEREWARDRDHPAPRRGGG---GAGAGAWS 106
>03_01_0031 + 292335-292844
Length = 169
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 82 WIPWWRQRSWRPTWSWSR 135
W W R+R WR W W R
Sbjct: 39 WRRWRRRRGWRRRWGWQR 56
>04_03_0039 - 10024789-10025223
Length = 144
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 116 GRHDLCRHHGIQSRRGNRHVHRLELRPPLLNDQCSR 9
GR DL R H + R + V R+ RP QC R
Sbjct: 99 GRGDLVRRHDAKEARRDGEVERVARRPDAEEAQCGR 134
>10_07_0161 - 13674631-13675433,13675793-13675862
Length = 290
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +1
Query: 58 TWRFPRRLWI---PWWRQR-SWRPTWSWSRTRARPWPWQGRPERVGASHQAWS 204
+WR P W+ PW Q+ +WRP S W G P G SH W+
Sbjct: 229 SWR-PAGPWVCFNPWPAQQLAWRPPPPPSPLSWSSWAGSGGPLFPGTSHLRWA 280
>06_03_0892 - 25713502-25714125,25714309-25715199
Length = 504
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 188 LAPTLSGLPCHGHGRARVRDHDHVGRHDLCRHHG 87
L P+ GLP GH V HV DL R HG
Sbjct: 35 LPPSPWGLPVIGHLHHLVGALPHVAMRDLARRHG 68
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 248 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 367
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 164 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 298
+ KE +P G V G+ +++ + SLPIK++ + FF G
Sbjct: 805 DGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849
>10_02_0115 + 5445580-5445606,5446118-5446609
Length = 172
Score = 27.5 bits (58), Expect = 8.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 82 WIPWWRQRSWRPTWS 126
W+ W R+R WR WS
Sbjct: 27 WVAWRRRRRWRIRWS 41
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = -1
Query: 161 CHGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVHRLELRPPLL 27
CHGH DH H HD HH ++ + + P +L
Sbjct: 580 CHGH------DHHHHHHHDHSEHHQQSGDHAHQDISNISSDPAIL 618
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 95 HHGIQSRRGNRHVHRLELRPP 33
HH RRG+RH +LRPP
Sbjct: 5 HHHHHPRRGSRHAAAGDLRPP 25
>02_04_0551 + 23801464-23801802
Length = 112
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +1
Query: 91 WWRQRSWRPTWSWSRTRARPWPWQGRPERVGASHQAWSPC 210
W R RS R W R R P PW+ R + W+ C
Sbjct: 30 WSRSRSRR---HWRRRR-EPRPWRRRQRGAAGGGRTWTTC 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,637,317
Number of Sequences: 37544
Number of extensions: 338140
Number of successful extensions: 1038
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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