Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_F01
(590 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 233 9e-62
Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 4.3
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 28 4.3
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 28 4.3
Z50109-6|CAA90439.2| 344|Caenorhabditis elegans Hypothetical pr... 28 5.7
AC006617-12|AAF39774.1| 324|Caenorhabditis elegans Serpentine r... 28 5.7
Z81579-6|CAB04652.3| 347|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 27 7.5
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 27 7.5
AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical ... 27 7.5
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ... 27 10.0
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ... 27 10.0
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 233 bits (569), Expect = 9e-62
Identities = 114/142 (80%), Positives = 122/142 (85%)
Frame = +2
Query: 164 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 343
E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEIID L +L DEVLKI PVQK
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110
Query: 344 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKI 523
QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKI
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170
Query: 524 GKPHTVPCKVTGKCGSVTVRLI 589
G PHTVPCKVTGKC SV VRLI
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLI 192
>Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical
protein H13N06.5 protein.
Length = 462
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -1
Query: 158 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVHRLE 45
HGH DH H HD HHG S + H H E
Sbjct: 99 HGHSHDEEEDHHHGHAHD---HHG-HSHEDHGHSHGAE 132
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Frame = -1
Query: 158 HGHGRARVRDHDHVGRHDLCR-HHGIQSRRGNRHVH 54
H HG A DH H H HHG H H
Sbjct: 76 HDHGHAHDHDHGHAHDHGHAHDHHGHSHDEEEDHHH 111
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 331 ACTETDACRSAYAFQGVCCYR**QWTHWFGCE 426
+CTE DA ++ G C + W+ W CE
Sbjct: 934 SCTEDDASQTRRCVNGPCEHSYLTWSEWTTCE 965
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 331 ACTETDACRSAYAFQGVCCYR**QWTHWFGCE 426
+CTE DA ++ G C + W+ W CE
Sbjct: 934 SCTEDDASQTRRCVNGPCEHSYLTWSEWTTCE 965
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Frame = -1
Query: 158 HGHGRARVRDHDHVGRHDLC-RHHGIQSRRGNRHVH 54
HGH H H G H HHG G H H
Sbjct: 516 HGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGH 551
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 158 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRH 60
H HG V H H G H HHG G H
Sbjct: 646 HHHGSHGVH-HGHHGTHHSLAHHGHHGGHGTHH 677
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 331 ACTETDACRSAYAFQGVCCYR**QWTHWFGCE 426
+CTE DA ++ G C + W+ W CE
Sbjct: 934 SCTEDDASQTRRCVNGPCEHSYLTWSEWTTCE 965
>Z50109-6|CAA90439.2| 344|Caenorhabditis elegans Hypothetical
protein C09H10.8 protein.
Length = 344
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 504 PLRTGRTDNLASMMAPRIAVATSLLHFTPKPMCPLLSPI 388
PLR T+++ SM + R + + S HF M P ++P+
Sbjct: 191 PLRLSITNSIISMASMRSSRSRSASHFLEPNMSPAIAPM 229
>AC006617-12|AAF39774.1| 324|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 67 protein.
Length = 324
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 437 PCCTSHPNQCVHCYH 393
PC PN C+HCYH
Sbjct: 80 PCKYIGPNFCLHCYH 94
>Z81579-6|CAB04652.3| 347|Caenorhabditis elegans Hypothetical
protein R13H4.7 protein.
Length = 347
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +1
Query: 55 WTWRFPRRLWIPWWRQRSWRPTWSWSRTRARPWP 156
W W L WW +WSR A WP
Sbjct: 76 WRWNIHIYLDFTWWAMVYHYTVIAWSRLAAVQWP 109
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 369 RVR*PARVCFCTGMIFRTSSLS-EGPRKKSMISNSLMGRENR*MLSSLSILPSRTRRPSL 193
R R P + T R+SS+ P S +S + R + S+ PSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 192 VTGT 181
+ T
Sbjct: 582 QSNT 585
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 369 RVR*PARVCFCTGMIFRTSSLS-EGPRKKSMISNSLMGRENR*MLSSLSILPSRTRRPSL 193
R R P + T R+SS+ P S +S + R + S+ PSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 192 VTGT 181
+ T
Sbjct: 582 QSNT 585
>AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical
protein Y50D4A.3 protein.
Length = 407
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 425 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKV 553
+CS E T G ++ GY+G+ +G HT+ CK+
Sbjct: 284 ECSGEDPTNPGGPGESRRIKAFKWFNGYFGSPVGPEHTLSCKM 326
>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
protein C36B7.5b protein.
Length = 1148
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 403 WTHWFGCEVQQGSGNC 450
WT W GC V G G C
Sbjct: 599 WTPWSGCSVSCGQGVC 614
>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
protein C36B7.5a protein.
Length = 1121
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 403 WTHWFGCEVQQGSGNC 450
WT W GC V G G C
Sbjct: 599 WTPWSGCSVSCGQGVC 614
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,690,664
Number of Sequences: 27780
Number of extensions: 261333
Number of successful extensions: 824
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -