Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_E24
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 286 2e-78
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 285 4e-78
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 284 5e-78
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 1.8
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 26 4.2
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 5.5
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 5.5
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 5.5
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 7.3
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 7.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.6
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 286 bits (701), Expect = 2e-78
Identities = 126/175 (72%), Positives = 147/175 (84%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRTRLKYALTGNE 200
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLR RLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISSNKIMDFIKF 545
YKLC V+RV G K VP+LVTHDGRT+RYPDPLI VND+++L++ +NKI FIKF
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKF 175
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 285 bits (698), Expect = 4e-78
Identities = 125/175 (71%), Positives = 147/175 (84%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRTRLKYALTGNE 200
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLR RLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISSNKIMDFIKF 545
YKLC V+RV G K VP+LVTHDGRT+RYPDPLI VND+++L++ +NKI FIKF
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKF 175
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 284 bits (697), Expect = 5e-78
Identities = 125/175 (71%), Positives = 147/175 (84%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRTRLKYALTGNE 200
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLR RLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISSNKIMDFIKF 545
YKLC V+RV G K VP+LVTHDGRT+RYPDPLI VND+++L++ +NKI FIKF
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKF 175
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 150 LVIFLRTRLKYALTGNEVLKIV 215
L+ F+ TRL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 141 CLPLVIFLRTRLKYALTGNEVLKI 212
C L+ FL TRL+ L+ E+LKI
Sbjct: 121 CGGLIDFLNTRLQVRLSEQEILKI 144
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 5.5
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -3
Query: 433 YGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGS 254
YGTLL L L + + + +LP ++ +F ++ T+ G + S
Sbjct: 578 YGTLLMHFEPTYALSRLVSFAPPEVTF--SLPELDFLTSVFNFPLALRNTATRILGIILS 635
Query: 253 VR--TFPSTLMRRCFTILSTS 197
+ T S ++ CFTI+STS
Sbjct: 636 TKDSTRISEVLSSCFTIISTS 656
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 415 PVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFS 296
P+ RRT L L+ + W F S + RN +FS
Sbjct: 423 PILKRRTPQELLLSGRDLTPWPQIRRFDSLLARNRGDIFS 462
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.4 bits (53), Expect = 5.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 123 PHKLRECLPLVIFLRTRLKYALTGNEVLKIVKQRLIKVDG--KVRTD 257
P +CL + F+ T + LT E ++KQ KV G VRTD
Sbjct: 234 PEGNSDCLSGISFVITGILETLTRQEATDLIKQYGGKVTGAPSVRTD 280
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 325 IKRNNSFVFSMDTTSINPAGYVGSV 251
+K+ ++ VF +INPA Y G+V
Sbjct: 40 LKKRDTNVFDSVVDTINPASYFGTV 64
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 178 LSRVRRKITSGKHSRSLWGPVEGRGAYTPPSLS 80
L R++R + + S+W +E A+ PSLS
Sbjct: 597 LLRLKRSNRTAAQTASVWNRIERAAAHDGPSLS 629
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 282 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYL-VTHDGRT 458
+V S+EK N++F + Y+V + + + K+ ++ ++ K+VP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 459 LR 464
L+
Sbjct: 1778 LK 1779
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 337 KEGSLSTVSHLKKPSTSCAMCGASRPA 417
KE L + +K S SC++CG R A
Sbjct: 282 KEAVLQKMKEQQKYSCSCSVCGRKRLA 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,514
Number of Sequences: 5004
Number of extensions: 46277
Number of successful extensions: 135
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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