Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_E24
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 266 8e-72
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 265 1e-71
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 264 2e-71
01_01_1101 + 8731427-8732938 30 1.0
01_05_0674 - 24187820-24188713,24188809-24189204 29 1.8
12_01_1046 - 10756062-10756326,10757618-10757782,10757901-107582... 29 3.2
10_08_0510 + 18430580-18431781,18433176-18433554 29 3.2
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 29 3.2
03_02_0539 - 9329572-9330729,9330988-9331041 28 4.2
02_04_0415 + 22706964-22707072,22707784-22708077,22708304-227084... 28 4.2
01_05_0710 + 24492337-24493053 28 4.2
04_04_0950 + 29609484-29611025 27 7.4
03_05_0057 + 20350971-20351405 27 7.4
02_04_0395 + 22590097-22590343,22590566-22590921 27 7.4
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 27 7.4
12_01_0337 - 2591689-2593839 27 9.8
08_02_0803 + 21390525-21391066,21391799-21391958 27 9.8
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 27 9.8
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 266 bits (652), Expect = 8e-72
Identities = 119/174 (68%), Positives = 142/174 (81%)
Frame = +3
Query: 24 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRTRLKYALTGNEV 203
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LR RLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 204 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 383
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137
Query: 384 KLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISSNKIMDFIKF 545
KLC VR V G K +P+L T+DGRT+RYPDPLI ND++++D+ +NKI+DFIKF
Sbjct: 138 KLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKF 191
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 265 bits (650), Expect = 1e-71
Identities = 117/175 (66%), Positives = 143/175 (81%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRTRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +R RLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISSNKIMDFIKF 545
+KLC VR V G K +PYL T+DGRT+RYPDPLI ND++++D+ +NKI+DFIKF
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKF 175
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 264 bits (648), Expect = 2e-71
Identities = 116/175 (66%), Positives = 143/175 (81%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRTRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +R RLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISSNKIMDFIKF 545
+KLC VR V G K +PYL T+DGRT+RYPDP+I ND++++D+ +NKI+DFIKF
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKF 175
>01_01_1101 + 8731427-8732938
Length = 503
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 206 KHLIAGERVLEPSSQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 72
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 398 AARRDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLQQQD 526
AA R P A A AP P P+HQ ++ +RH D
Sbjct: 149 AANRRAPAAAAKHRPAADQFAPPPAPSHQWAKIKRSRHATDHD 191
>12_01_1046 -
10756062-10756326,10757618-10757782,10757901-10758206,
10758279-10758377,10760555-10760670,10760756-10760848,
10760946-10761107,10761784-10762170
Length = 530
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 513 RCRAAPSRSH**AGPGTGACARRASPGTARSWGRSRRAAHCTAC 382
R RAAP + + G GA ASP A WGRS A+ C
Sbjct: 40 RARAAPRLAVSASSAGAGA----ASPSPAAGWGRSDAASSLERC 79
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 529 MILLLEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 380
M L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 193 MDYLCKNGRCTEARKIFDSMTKRGLKPD-ITTYGTLLQGYATKGALVEMH 241
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 529 MILLLEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 380
M L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPE-ITTYGTLLQGYATKGALVEMH 359
>03_02_0539 - 9329572-9330729,9330988-9331041
Length = 403
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 374 SQVQAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQCER 493
S A AA++ RP A AR A AP P PA +C R
Sbjct: 58 SSASAAAAAAQQARPNSMAER--ARLARAPQPEPALKCPR 95
>02_04_0415 +
22706964-22707072,22707784-22708077,22708304-22708416,
22708504-22709002,22709106-22709144,22709228-22709515,
22709766-22709905,22710468-22710960,22711082-22711356
Length = 749
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 327 YDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPD 473
+ V G T ITP EA N+ T + P +++H+G + YPD
Sbjct: 321 FSVDGVLTDFPITPSEAIGCFSNLNNSKTD-NAKPLIISHNGASGDYPD 368
>01_05_0710 + 24492337-24493053
Length = 238
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -3
Query: 520 LLEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWI 350
L M + T +F L++ + +RPS + LLG + +RR ++ V+RW+
Sbjct: 93 LASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSRRRARE----AASVVRWL 145
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 220 CFTILSTSLPVSAYLSRVRRKITSGKHSRSLWGPVEGRGAYTP 92
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>03_05_0057 + 20350971-20351405
Length = 144
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +2
Query: 383 QAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQCERLG 499
Q Q AAR D P R + AP PG A RLG
Sbjct: 29 QPPQAAARPDEAPHHRQPAPDRPSAAPEPGGAGGVARLG 67
>02_04_0395 + 22590097-22590343,22590566-22590921
Length = 200
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -1
Query: 429 ARSWGRSRRAAHCTACTWLLQV*YGG 352
ARSW RSRR H W L GG
Sbjct: 47 ARSWIRSRRRGHGVGEAWALAAATGG 72
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 315 FRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGP 419
+ LIYD++G + + P++A L + V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 451 PSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYI 323
P C + Y +L P+A + LH+ + S I + LP S +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLL 141
>08_02_0803 + 21390525-21391066,21391799-21391958
Length = 233
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 196 LPVSAYLSRVRRKITSGKHSRSLWGPVEGRGAYTPP 89
LP Y+S +RR S + RSL + R A +PP
Sbjct: 24 LPSRPYISDMRRSAFSDRLLRSLRSEISSRRAPSPP 59
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -3
Query: 130 LWGPVEGRGAYTPPSLSNIHALGAFKR 50
L G G G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,176,867
Number of Sequences: 37544
Number of extensions: 359028
Number of successful extensions: 1297
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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