Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E22
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    29   1.7  
Z81517-2|CAB04209.1|  973|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 457 YHPGPHHSLNNSQDFGQN 510
           YHP  H SLNN  +F QN
Sbjct: 790 YHPNTHVSLNNHSNFAQN 807


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 457 YHPGPHHSLNNSQDFGQN 510
           YHP  H SLNN  +F QN
Sbjct: 790 YHPNTHVSLNNHSNFAQN 807


>Z81517-2|CAB04209.1|  973|Caenorhabditis elegans Hypothetical
           protein F28B1.2 protein.
          Length = 973

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 371 QVQKPVAKYQ*VCSGSITLEPVLRVLSEFTIL 466
           QV +P+ + Q  CS  +T +PV  V S FT++
Sbjct: 30  QVWEPIVEAQDDCSLQVTCKPVPGVRSFFTVM 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,504,201
Number of Sequences: 27780
Number of extensions: 293886
Number of successful extensions: 585
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)