Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E20
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0384 - 24853689-24853727,24853802-24853861,24854311-248543...    28   3.1  
07_03_1050 - 23570785-23570824,23570938-23571004,23571114-235711...    27   4.1  
06_03_1142 + 27961999-27962263,27963735-27965080,27965158-279654...    27   5.5  
02_02_0087 - 6650570-6652021                                           27   7.2  
05_07_0262 + 28769335-28769391,28769732-28769855,28770175-287702...    26   9.5  
04_03_0151 + 11905926-11906618                                         26   9.5  
01_05_0782 - 25148733-25149166,25149252-25149415,25149636-251496...    26   9.5  

>04_04_0384 -
           24853689-24853727,24853802-24853861,24854311-24854357,
           24854487-24854565,24855184-24855279,24855645-24855714,
           24855787-24855857,24856010-24856105,24856501-24856628,
           24856733-24856853
          Length = 268

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +2

Query: 14  IDTSLESAVIAKK*LLIPLKMVKTVVRFLIISMIVHLVVAKIVNKRKCPEVRAVP-YFDL 190
           I T++ + + A K +L+PL     ++R  I  M +HL ++  + ++ C EV +VP  F++
Sbjct: 116 IMTTIVTVMHAYKIVLLPLF---PMLRVNICFMPIHLFLSYFIVQKYCSEVVSVPGSFEI 172

Query: 191 P 193
           P
Sbjct: 173 P 173


>07_03_1050 -
           23570785-23570824,23570938-23571004,23571114-23571196,
           23572028-23572201,23572268-23572471,23572570-23573300
          Length = 432

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 353 VGKIHRYSRCDIPPCHLHLQRGHLE*KQLSC 261
           VG  H  S+    PCH H  RG+ + K ++C
Sbjct: 124 VGHPHSSSKSSSKPCHFHFFRGYCK-KGVNC 153


>06_03_1142 +
           27961999-27962263,27963735-27965080,27965158-27965435,
           27965706-27965737,27965830-27966236,27966373-27966858
          Length = 937

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 176 PYFDLPQMLGDWFVVEYYASAEEALSYSCMRAVFTQDDHVAGA 304
           PYF L   + D+F +   AS  +   +  + A+F  DD+  GA
Sbjct: 139 PYF-LRSTMSDYFQMHAVASIVDYYQWKEVTAIFVDDDYGRGA 180


>02_02_0087 - 6650570-6652021
          Length = 483

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -1

Query: 290 GHLE*KQLSCNCTIVLLQRSHSIQRQTSHQASAANRSTALLSL 162
           GH+  +++SC  T ++ +   S+++ +  +A  A R+  +L+L
Sbjct: 77  GHVSAREVSCKYTTIVSRCVFSLKKGSVREARLAYRAIGILAL 119


>05_07_0262 +
           28769335-28769391,28769732-28769855,28770175-28770266,
           28770673-28771078,28772057-28772184,28772273-28772332,
           28772814-28772963,28772999-28773061,28773062-28773217,
           28773361-28773572,28773698-28773796,28774343-28774512,
           28774592-28775040
          Length = 721

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 355 R*VKFIVTPGVTFHRAICTCNVVILSKNSSHATVR*CFFS-ARIVFNDKPVT 203
           R +K+I T  V +HR +   N++     +S+  ++ C F  AR+ FND P T
Sbjct: 219 RALKYIHTASV-YHRDLKPKNILA----NSNCKLKICDFGLARVAFNDTPTT 265


>04_03_0151 + 11905926-11906618
          Length = 230

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 320 IPPCHLH-LQRGHLE*KQLSCNCTIVLLQRSHSIQRQTSHQASAANRSTALLS 165
           +PP  +  LQ    + KQ   N + + LQR  ++ RQ   QAS+A    A++S
Sbjct: 120 VPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQHPRQASSAPGHPAVVS 172


>01_05_0782 -
           25148733-25149166,25149252-25149415,25149636-25149664,
           25150049-25150109,25150264-25150475,25150587-25150742,
           25150837-25150986,25151486-25151545,25151653-25151780,
           25152399-25152807,25153087-25153106,25153916-25154048
          Length = 651

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 355 R*VKFIVTPGVTFHRAICTCNVVILSKNSSHATVR*CFFS-ARIVFNDKPVT 203
           R +K+I T  V +HR +   N++     +S+  ++ C F  AR+ FND P T
Sbjct: 180 RALKYIHTANV-YHRDLKPKNILA----NSNCKLKICDFGLARVAFNDTPTT 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,848,755
Number of Sequences: 37544
Number of extensions: 172892
Number of successful extensions: 420
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)