Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E19
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0440 + 17192122-17192691,17193947-17194912                       27   5.5  
07_01_0375 - 2790287-2790675,2790843-2793783                           27   5.5  
04_04_0368 + 24741755-24741970,24742415-24742811,24742892-247431...    27   7.2  
11_01_0443 - 3399226-3399242,3399551-3399731,3399847-3399936,340...    26   9.6  
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886...    26   9.6  
06_03_0452 + 20931484-20933872,20933950-20934074                       26   9.6  

>08_02_0440 + 17192122-17192691,17193947-17194912
          Length = 511

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 50  SKSYTQSYISQWICPS--SMGCCLRSYRSCKIVRS*IKLYRKNSA 178
           ++S      S+ +CPS  +  C  + YR  K V   ++LY K  A
Sbjct: 341 AESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKA 385


>07_01_0375 - 2790287-2790675,2790843-2793783
          Length = 1109

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 156 SYTGKTPQQLATLLKTTDINLMATTLDGT 242
           S TG  PQ+L TL+    + L   +L+GT
Sbjct: 566 SLTGVIPQELGTLVNLEQLKLSDNSLNGT 594


>04_04_0368 +
           24741755-24741970,24742415-24742811,24742892-24743187,
           24743860-24744096
          Length = 381

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 173 SFSCIT*SSSEQFCMTYRIVGNSPWS 96
           +F C+T    E F + Y+  G S WS
Sbjct: 57  AFRCLTVWKQEDFVLRYKNTGESQWS 82


>11_01_0443 -
           3399226-3399242,3399551-3399731,3399847-3399936,
           3400377-3400459,3400540-3400667,3400747-3401002,
           3401094-3401199,3401300-3401366,3401467-3401580,
           3401811-3401889,3402189-3402359,3403135-3403267,
           3403874-3404033,3404119-3404261
          Length = 575

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 309 TVLLDAPINLLRSGNFSHIPYIAG 380
           T +LDA ++++R G F HIP + G
Sbjct: 302 TSILDA-LHIMRDGKFLHIPVVDG 324


>07_03_1297 +
           25587445-25587502,25587646-25587740,25588426-25588629,
           25588843-25588959,25589084-25589212,25589591-25589717,
           25590174-25590277,25590369-25590473,25590969-25591190,
           25591869-25591967
          Length = 419

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = -1

Query: 337 RFIGASNKTVSLGFRLGFSKHGANNRVLFVNCVPSSVVAIKLISVVFNNVAN 182
           R +G S  T+          HG      F+   PS    IKL+S  F N  N
Sbjct: 313 RIVGGSEHTLRAKLTFSQESHGIILDCSFLVYAPSDFSVIKLMSRFFWNAGN 364


>06_03_0452 + 20931484-20933872,20933950-20934074
          Length = 837

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 135 KLFGARLSYTGKTPQQLATLLKTTDINLMATTLDG 239
           +LF +   +TG  P  +A L K T++ L   + +G
Sbjct: 324 RLFLSNNHFTGSIPDSVALLPKLTNVQLFQNSFEG 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,508,530
Number of Sequences: 37544
Number of extensions: 163553
Number of successful extensions: 478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)