Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E18
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   153   1e-38
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   153   1e-38
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   3.7  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   3.7  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    24   6.5  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    24   8.6  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  153 bits (370), Expect = 1e-38
 Identities = 70/120 (58%), Positives = 79/120 (65%)
 Frame = +3

Query: 9   HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGTMCRGGRIFAPTKPWRRWHXXXXXXX 188
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFG MCR GR+FAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 189 XXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSD 368
                              ARGH +E+IPE+PLVV D VQ   KTK+AV  L+ IKA+ D
Sbjct: 120 KRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRD 179


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  153 bits (370), Expect = 1e-38
 Identities = 70/120 (58%), Positives = 79/120 (65%)
 Frame = +3

Query: 9   HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGTMCRGGRIFAPTKPWRRWHXXXXXXX 188
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFG MCR GR+FAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 189 XXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSD 368
                              ARGH +E+IPE+PLVV D VQ   KTK+AV  L+ IKA+ D
Sbjct: 120 KRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRD 179


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = -2

Query: 145  VGAKIRPPRHMVPNAPCPDLWVPPPRTRGIRATARPVPQDSA 20
            VG    PP    P  P P   +PP      +A   P P   A
Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEA 1246



 Score = 25.0 bits (52), Expect = 3.7
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 127  PPRHMVPNAPCPDLWVPPPRTRGIRATARPVPQDSA 20
            PP    P  P P + VPP       +TA PVP  SA
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSA 1224


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 127  PPRHMVPNAPCPDLWVPPP 71
            PP+   P  P P + VPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 266 LNNMPSSLNEGRY-PGRCHGGGHGSTSLP*VHATVPA 159
           L N+P +L   RY     HG  HGS S P     VP+
Sbjct: 47  LYNLPRTLLNSRYYSNHSHGLVHGSKSPPSSQFLVPS 83


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 331 ACLVLLISWTLSETTNGNSGIFSTI 257
           AC   L  W L  TTN   G+ S I
Sbjct: 90  ACFHFLSEWLLFRTTNLGPGLLSPI 114


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +1

Query: 121 AADVSSRRPSRGGAGTVA*TYGRDVLPWPPPW---QRPGYRPS 240
           AA  SS  P+   A +    YG    P+PP     Q+P Y P+
Sbjct: 76  AASASSAAPAPAPAASQNRAYGAAPQPYPPQGGYPQQPYYYPN 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,126
Number of Sequences: 5004
Number of extensions: 20667
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)