Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E18
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   156   4e-39
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    27   4.2  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    27   4.2  
Z79597-1|CAB01861.1|  271|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z29561-4|CAD91697.1|  498|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z29561-2|CAD54152.1|  882|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z29561-1|CAA82667.2|  861|Caenorhabditis elegans Hypothetical pr...    26   7.3  
U73679-1|AAC67305.1|  861|Caenorhabditis elegans YNK1-a protein.       26   7.3  
AL024499-8|CAL22708.1|  106|Caenorhabditis elegans Hypothetical ...    26   9.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  156 bits (379), Expect = 4e-39
 Identities = 70/119 (58%), Positives = 82/119 (68%)
 Frame = +3

Query: 12  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGTMCRGGRIFAPTKPWRRWHXXXXXXXX 191
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFG MCRGG +FAP K +RRWH        
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQK 119

Query: 192 XXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSD 368
                            QARGH+++++ E+PLVVSDKV+   KTK+AV+FLRR   W+D
Sbjct: 120 RYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWAD 178


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 151 GLVGAKIRPPRHMVPNAPCPDLWVPPPRTRG 59
           G+ GA   PP    P AP P +++PPP   G
Sbjct: 154 GMPGAY--PPPRGYPPAPAPGVYMPPPGMPG 182


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 151 GLVGAKIRPPRHMVPNAPCPDLWVPPPRTRG 59
           G+ GA   PP    P AP P +++PPP   G
Sbjct: 154 GMPGAY--PPPRGYPPAPAPGVYMPPPGMPG 182


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 72   GGGTHRSGQGAFGTMCRGGRIFAP 143
            GGG  R G G+   M RGGR+  P
Sbjct: 2157 GGGGGRGGYGSTLVMPRGGRVVRP 2180


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 72   GGGTHRSGQGAFGTMCRGGRIFAP 143
            GGG  R G G+   M RGGR+  P
Sbjct: 2157 GGGGGRGGYGSTLVMPRGGRVVRP 2180


>Z79597-1|CAB01861.1|  271|Caenorhabditis elegans Hypothetical
           protein C33A11.2 protein.
          Length = 271

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 196 LPWPPPWQRPGYRPSFRLEGI 258
           LP P PW R  Y+P + L  I
Sbjct: 195 LPTPRPWSRRIYQPGYELHQI 215


>Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical
           protein F13E6.4 protein.
          Length = 442

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 248 SLNEGRYPGRCHGGGHGSTSLP*VH 174
           ++ + RY   C+  GH S SLP +H
Sbjct: 249 NIGQNRY-NNCYDNGHSSRSLPSIH 272


>Z29561-4|CAD91697.1|  498|Caenorhabditis elegans Hypothetical
           protein R10E12.1d protein.
          Length = 498

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 127 PPRHMVPNAPCPDLWVPPPRT-RGIRATARPVPQ 29
           PPR   P+   P   +PPPRT + ++AT    PQ
Sbjct: 375 PPRPAAPSVESP---IPPPRTQQSMQATPGAPPQ 405


>Z29561-2|CAD54152.1|  882|Caenorhabditis elegans Hypothetical
           protein R10E12.1b protein.
          Length = 882

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 127 PPRHMVPNAPCPDLWVPPPRT-RGIRATARPVPQ 29
           PPR   P+   P   +PPPRT + ++AT    PQ
Sbjct: 759 PPRPAAPSVESP---IPPPRTQQSMQATPGAPPQ 789


>Z29561-1|CAA82667.2|  861|Caenorhabditis elegans Hypothetical
           protein R10E12.1a protein.
          Length = 861

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 127 PPRHMVPNAPCPDLWVPPPRT-RGIRATARPVPQ 29
           PPR   P+   P   +PPPRT + ++AT    PQ
Sbjct: 738 PPRPAAPSVESP---IPPPRTQQSMQATPGAPPQ 768


>U73679-1|AAC67305.1|  861|Caenorhabditis elegans YNK1-a protein.
          Length = 861

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 127 PPRHMVPNAPCPDLWVPPPRT-RGIRATARPVPQ 29
           PPR   P+   P   +PPPRT + ++AT    PQ
Sbjct: 738 PPRPAAPSVESP---IPPPRTQQSMQATPGAPPQ 768


>AL024499-8|CAL22708.1|  106|Caenorhabditis elegans Hypothetical
           protein H38K22.7 protein.
          Length = 106

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 148 LVGAKIRPPRHMVPNAPCPDLWVPP 74
           LVG K +P +  V N  CP    PP
Sbjct: 39  LVGPKTKPSQKSVENVHCPVSQAPP 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,481,244
Number of Sequences: 27780
Number of extensions: 138315
Number of successful extensions: 464
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)