Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E16
         (189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    56   6e-10
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    56   8e-10
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    56   8e-10
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    43   5e-06
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    36   7e-04
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    29   0.11 
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   1.00 
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    23   4.0  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    23   5.3  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    23   5.3  
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc...    23   5.3  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    23   5.3  
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    23   5.3  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    23   5.3  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    23   7.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    22   9.3  

>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 56.0 bits (129), Expect = 6e-10
 Identities = 25/30 (83%), Positives = 28/30 (93%)
 Frame = +1

Query: 25  AVLIVAAGTGEFEAGISKNGQTREHALLAF 114
           AVLI+  GTGEFEAGISK+GQTREHALLA+
Sbjct: 112 AVLIIGGGTGEFEAGISKDGQTREHALLAY 141



 Score = 31.9 bits (69), Expect = 0.011
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 113 FTLGVTQLIVRVNKMDST 166
           +TLGV QLIV VNKMD+T
Sbjct: 141 YTLGVKQLIVAVNKMDTT 158


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 55.6 bits (128), Expect = 8e-10
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = +1

Query: 25  AVLIVAAGTGEFEAGISKNGQTREHALLAF 114
           A+LI+  GTGEFEAGISK+GQTREHALLA+
Sbjct: 112 AILIIGGGTGEFEAGISKDGQTREHALLAY 141



 Score = 31.9 bits (69), Expect = 0.011
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 113 FTLGVTQLIVRVNKMDST 166
           +TLGV QLIV VNKMD+T
Sbjct: 141 YTLGVKQLIVAVNKMDTT 158


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 55.6 bits (128), Expect = 8e-10
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = +1

Query: 25  AVLIVAAGTGEFEAGISKNGQTREHALLAF 114
           A+LI+  GTGEFEAGISK+GQTREHALLA+
Sbjct: 112 AILIIGGGTGEFEAGISKDGQTREHALLAY 141



 Score = 31.9 bits (69), Expect = 0.011
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 113 FTLGVTQLIVRVNKMDST 166
           +TLGV QLIV VNKMD+T
Sbjct: 141 YTLGVKQLIVAVNKMDTT 158


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 43.2 bits (97), Expect = 5e-06
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = +1

Query: 28  VLIVAAGTGEFEAGISKNGQTREHALLA 111
           VL+++A  GEFEAG  + GQTREHA+LA
Sbjct: 344 VLVISARRGEFEAGFERGGQTREHAVLA 371


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 35.9 bits (79), Expect = 7e-04
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +1

Query: 25  AVLIVAAGTGEFEAGISKNGQTREHALL 108
           AVL+V +    FE G  +NGQTREHA L
Sbjct: 282 AVLVVDSSQNNFERGFLENGQTREHAYL 309



 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 110 LFTLGVTQLIVRVNKMD 160
           L  LG+++++V VNK+D
Sbjct: 310 LRALGISEIVVSVNKLD 326


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 11  NSARGPCLLSPLVLVNSKPVSQRTDKRVNTLCSLFTLGVTQLIVRVNKMDSTEPPYSE 184
           N   G   +   ++V S    Q    R + L +   +GV Q++V +NK+D  EP   E
Sbjct: 132 NMITGAATMDGAIIVVSATDGQMPQTREHLLLAR-QVGVKQIVVYINKVDMVEPDMIE 188


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 26  PCLLSPLVLVNSKPVSQRTDKRVNTLCSLFTL 121
           PC++  L L+NS+ +    D+RV  L  +F+L
Sbjct: 525 PCIVLLLDLLNSQKIIYLDDERVVLLNKIFSL 556


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 70  ISKNGQTREHALLAFHTRSHATDCTSKQNGLH 165
           + K+     H+LL  +T S+    TS+ +G+H
Sbjct: 132 VKKSFSRPSHSLLYPYTSSNNMTSTSRMSGIH 163


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 38  SPLVLVNSKPVSQRTDKRVNTLCS 109
           +P  L NSKPV+   + RV  + S
Sbjct: 197 NPYNLSNSKPVNNNNEDRVEAVTS 220


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 154  FVYSYNQLRDSECEKRAERVHAFVRSLRY 68
            F+Y YNQ+  ++  +  +R+ +  RS  Y
Sbjct: 1053 FLYRYNQVYYTQTSRELKRLDSVTRSPLY 1081


>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
           Nse4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 124 SECEKRAERVHAFVRSLRYRLRIHQYQRRQ 35
           S CEK+   ++  V  L +R +    QRR+
Sbjct: 123 SNCEKQPASLNLMVGPLSFRKKERNIQRRE 152


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 107 SRACSRVCPFFEIPASNSPVP 45
           S +C+R+ P   +P S  P P
Sbjct: 605 SLSCARIRPLVMVPKSKKPSP 625


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 39  RRWYW*IRSRYLKERTNA*TRSARFSHSESRN 134
           R W W + +   +    A T + RF++SE+ N
Sbjct: 164 RSWVWTVAADVSEGEPTAETFAIRFANSENAN 195


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 168 SVESILFTRTISCV 127
           S E I FTR +SC+
Sbjct: 205 SAEKIAFTRAVSCI 218


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 83  PFFEIPASNSPVPAATISTALVPNS 9
           P  E  +S++P+P+++ S  L P+S
Sbjct: 48  PPLETASSSTPIPSSSSSGVLNPSS 72


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 80  FFEIPASNSPVPAATISTALVP 15
           ++ IPA N P+    I+ A VP
Sbjct: 223 YYSIPAVNHPMAGQPIAIAPVP 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 808,429
Number of Sequences: 5004
Number of extensions: 11876
Number of successful extensions: 47
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)