Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_E16
(189 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 51 1e-07
03_01_0547 + 4093196-4093657,4094267-4095148 51 1e-07
03_01_0544 + 4082528-4082989,4083585-4084466 51 1e-07
03_01_0543 + 4076981-4077442,4078145-4079026 51 1e-07
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 42 7e-05
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 41 2e-04
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 32 0.056
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 31 0.17
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 31 0.17
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720... 27 2.8
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 26 4.9
08_02_0052 + 11699468-11699700,11699799-11699916,11699991-117006... 26 4.9
12_02_0414 + 18824347-18825161,18826018-18828229 25 6.4
05_03_0143 - 8873364-8873834,8873909-8874010 25 8.5
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 50.8 bits (116), Expect = 1e-07
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKNGQTREHALLAF 114
AVLI+ + TG FEAGISK+GQTREHALLAF
Sbjct: 112 AVLIIDSTTGGFEAGISKDGQTREHALLAF 141
Score = 34.7 bits (76), Expect = 0.011
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 113 FTLGVTQLIVRVNKMDSTEPPYSES 187
FTLGV Q+I NKMD+T P YS++
Sbjct: 141 FTLGVKQMICCCNKMDATTPKYSKA 165
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 50.8 bits (116), Expect = 1e-07
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKNGQTREHALLAF 114
AVLI+ + TG FEAGISK+GQTREHALLAF
Sbjct: 112 AVLIIDSTTGGFEAGISKDGQTREHALLAF 141
Score = 34.7 bits (76), Expect = 0.011
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 113 FTLGVTQLIVRVNKMDSTEPPYSES 187
FTLGV Q+I NKMD+T P YS++
Sbjct: 141 FTLGVKQMICCCNKMDATTPKYSKA 165
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 50.8 bits (116), Expect = 1e-07
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKNGQTREHALLAF 114
AVLI+ + TG FEAGISK+GQTREHALLAF
Sbjct: 112 AVLIIDSTTGGFEAGISKDGQTREHALLAF 141
Score = 34.7 bits (76), Expect = 0.011
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 113 FTLGVTQLIVRVNKMDSTEPPYSES 187
FTLGV Q+I NKMD+T P YS++
Sbjct: 141 FTLGVKQMICCCNKMDATTPKYSKA 165
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 50.8 bits (116), Expect = 1e-07
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKNGQTREHALLAF 114
AVLI+ + TG FEAGISK+GQTREHALLAF
Sbjct: 112 AVLIIDSTTGGFEAGISKDGQTREHALLAF 141
Score = 34.7 bits (76), Expect = 0.011
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 113 FTLGVTQLIVRVNKMDSTEPPYSES 187
FTLGV Q+I NKMD+T P YS++
Sbjct: 141 FTLGVKQMICCCNKMDATTPKYSKA 165
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 41.9 bits (94), Expect = 7e-05
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +1
Query: 28 VLIVAAGTGEFEAGISKNGQTREHALLA 111
VL+++A GEFE G K GQTREH LLA
Sbjct: 104 VLVISARKGEFETGYEKGGQTREHVLLA 131
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 116 TLGVTQLIVRVNKMDSTEPPYSE 184
TLGV +LIV +NKMD +S+
Sbjct: 133 TLGVAKLIVVINKMDEPTVKWSK 155
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +1
Query: 28 VLIVAAGTGEFEAGISKNGQTREHALLA 111
VL+++A GEFE G + GQTREH LLA
Sbjct: 59 VLVISARKGEFETGYERGGQTREHVLLA 86
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 116 TLGVTQLIVRVNKMDSTEPPYSE 184
TLGV++L+V +NKMD + +S+
Sbjct: 88 TLGVSKLVVVINKMDESTVGWSK 110
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 32.3 bits (70), Expect = 0.056
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKN--GQTREHALL 108
A+L++ A G FEAG+ N GQT+EH+ L
Sbjct: 339 AILVIDASIGSFEAGMGINGIGQTKEHSQL 368
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 116 TLGVTQLIVRVNKMDSTE 169
+ GV LIV VNKMDS E
Sbjct: 371 SFGVDNLIVVVNKMDSVE 388
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKN-----GQTREHALL 108
A+L+V A TG FEAG+ GQT+EHA L
Sbjct: 352 AILVVDACTGSFEAGMDGEGGKSVGQTKEHAQL 384
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 116 TLGVTQLIVRVNKMDS 163
+ GV QLIV VNKMD+
Sbjct: 387 SFGVEQLIVAVNKMDA 402
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKN-----GQTREHALL 108
A+L+V A TG FEAG+ GQT+EHA L
Sbjct: 352 AILVVDACTGSFEAGMDGEGGKSVGQTKEHAQL 384
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 116 TLGVTQLIVRVNKMDS 163
+ GV QLIV VNKMD+
Sbjct: 387 SFGVEQLIVAVNKMDA 402
>06_03_0526 +
21771519-21771607,21771685-21771810,21771890-21772010,
21772123-21772851,21772954-21773349,21774594-21774665,
21774741-21774803,21775236-21775337
Length = 565
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 7 HEFGTRAVLIVAAGTGEFEAGISKNGQTREHALL 108
HE GT+ + + +GE E G+S T A++
Sbjct: 107 HETGTKMAVFMGCDSGEIEVGLSAASATATAAVV 140
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 83 PFFEIPASNSPVPAATISTALVPN 12
P +PA+N+P AT T L PN
Sbjct: 26 PPLAVPATNTPPNPATTPTPLTPN 49
>08_02_0052 +
11699468-11699700,11699799-11699916,11699991-11700659,
11700741-11700842,11700921-11701181,11701838-11702009,
11702128-11702528,11703171-11703587
Length = 790
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 181 TVWWLSGVHFVYSYNQLRDSEC 116
T WL GV+ + Y+ LRD +C
Sbjct: 580 TTIWLPGVNPRHVYDHLRDEQC 601
>12_02_0414 + 18824347-18825161,18826018-18828229
Length = 1008
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 105 QSVFTRLSVL*DTGFEFTSTSGDNKHGPR 19
+SV ++ + L G +TSGDN GPR
Sbjct: 521 KSVSSKFARLIQNGEHLQTTSGDNNLGPR 549
>05_03_0143 - 8873364-8873834,8873909-8874010
Length = 190
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 104 RACSRVCPFFEIPASNSPVPAATISTALVPNSCS 3
R C R CP I A P+P+ +S++L P+S S
Sbjct: 132 RQCWR-CPVVLIDAGK-PLPSPAVSSSLSPHSSS 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,480,702
Number of Sequences: 37544
Number of extensions: 83301
Number of successful extensions: 311
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -