Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_E16
(189 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 58 7e-10
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 58 7e-10
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 58 7e-10
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 42 6e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 42 6e-05
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 41 1e-04
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 33 0.028
Z34533-9|CAA84303.2| 368|Caenorhabditis elegans Hypothetical pr... 28 1.1
Z30973-5|CAA83224.2| 368|Caenorhabditis elegans Hypothetical pr... 28 1.1
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 26 4.3
U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate fi... 26 4.3
Z92817-3|CAJ43914.1| 511|Caenorhabditis elegans Hypothetical pr... 25 7.5
Z81540-5|CAB04405.2| 946|Caenorhabditis elegans Hypothetical pr... 25 7.5
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 25 7.5
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 25 7.5
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 25 7.5
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 25 7.5
AF016681-2|AAY55841.1| 184|Caenorhabditis elegans Hypothetical ... 25 7.5
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 58.4 bits (135), Expect = 7e-10
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKNGQTREHALLA 111
AVL+VA GTGEFEAGISKNGQTREHALLA
Sbjct: 112 AVLVVACGTGEFEAGISKNGQTREHALLA 140
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 58.4 bits (135), Expect = 7e-10
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKNGQTREHALLA 111
AVL+VA GTGEFEAGISKNGQTREHALLA
Sbjct: 112 AVLVVACGTGEFEAGISKNGQTREHALLA 140
Score = 42.7 bits (96), Expect = 3e-05
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +2
Query: 116 TLGVTQLIVRVNKMDSTEPPYSES 187
TLGV QLIV NKMDSTEPP+SE+
Sbjct: 142 TLGVKQLIVACNKMDSTEPPFSEA 165
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 58.4 bits (135), Expect = 7e-10
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKNGQTREHALLA 111
AVL+VA GTGEFEAGISKNGQTREHALLA
Sbjct: 112 AVLVVACGTGEFEAGISKNGQTREHALLA 140
Score = 42.7 bits (96), Expect = 3e-05
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +2
Query: 116 TLGVTQLIVRVNKMDSTEPPYSES 187
TLGV QLIV NKMDSTEPP+SE+
Sbjct: 142 TLGVKQLIVACNKMDSTEPPFSEA 165
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 41.9 bits (94), Expect = 6e-05
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKNGQTREHALL 108
A+L+V A TGEFE G GQT+EHALL
Sbjct: 275 AILVVNATTGEFETGFENGGQTKEHALL 302
Score = 29.5 bits (63), Expect = 0.35
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2
Query: 110 LFTLGVTQLIVRVNKMDSTE 169
L +LGVTQLIV VNK+D+ +
Sbjct: 303 LRSLGVTQLIVAVNKLDTVD 322
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 41.9 bits (94), Expect = 6e-05
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKNGQTREHALL 108
A+L+V A TGEFE G GQT+EHALL
Sbjct: 293 AILVVNATTGEFETGFENGGQTKEHALL 320
Score = 29.5 bits (63), Expect = 0.35
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2
Query: 110 LFTLGVTQLIVRVNKMDSTE 169
L +LGVTQLIV VNK+D+ +
Sbjct: 321 LRSLGVTQLIVAVNKLDTVD 340
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 40.7 bits (91), Expect = 1e-04
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKNGQTREHALL 108
AVL+++A GEFE G + GQTREH++L
Sbjct: 214 AVLVISARRGEFETGFDRGGQTREHSML 241
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 33.1 bits (72), Expect = 0.028
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 134 LIVRVNKMDSTEPPYSES 187
L+V NKMDSTEPP+SE+
Sbjct: 114 LVVACNKMDSTEPPFSEA 131
>Z34533-9|CAA84303.2| 368|Caenorhabditis elegans Hypothetical
protein B0285.10 protein.
Length = 368
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKNGQTREHALLAFHTRSHA 132
A I+ G E I N Q REH + FH RS +
Sbjct: 323 ACFIMKLGLFECNREIKLNAQAREHLAVYFHLRSRS 358
>Z30973-5|CAA83224.2| 368|Caenorhabditis elegans Hypothetical
protein B0285.10 protein.
Length = 368
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 25 AVLIVAAGTGEFEAGISKNGQTREHALLAFHTRSHA 132
A I+ G E I N Q REH + FH RS +
Sbjct: 323 ACFIMKLGLFECNREIKLNAQAREHLAVYFHLRSRS 358
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 186 DSLYGGSVESILFTRTISCVTPSVKSEQSVFTRLS 82
D YGGSV + SC PS +S+ FT S
Sbjct: 441 DQSYGGSVVKTEGDISYSCKNPSQRSDVLSFTETS 475
>U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate
filament, d protein 2 protein.
Length = 443
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 169 LSGVHFVYSYNQLRDSECEKRAERVHAFVRSLRYRL-RIHQYQRRQ*ARPS 20
LS + SY + ++CE+ RVH+ + LR + R+H + ++ ++ S
Sbjct: 165 LSNLEAENSYIKRLTTDCEEEKSRVHSEISRLRSDIKRVHALRDKERSKHS 215
>Z92817-3|CAJ43914.1| 511|Caenorhabditis elegans Hypothetical
protein W08G11.3b protein.
Length = 511
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 130 RDSECEKRAERVHAFVRSLRYRLRIHQYQR 41
RD + +R ++VH R R R R Y+R
Sbjct: 12 RDRDSRRRHKKVHRHKRRSRTRSRSRSYER 41
>Z81540-5|CAB04405.2| 946|Caenorhabditis elegans Hypothetical
protein F46B3.5 protein.
Length = 946
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = -3
Query: 154 FVYSYNQLRDSECEKRAERVHAFVRSLRYRLRIHQ 50
F Y+ N+ + C+ R ++ + +V + IHQ
Sbjct: 485 FAYATNEKNEESCKYRVDKYYVYVYTTPVPYPIHQ 519
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
protein F32H2.5 protein.
Length = 2586
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 34 IVAAGTGEFEAGISKNGQTREHAL-LAFH 117
I+ TGE G + G TRE + LA+H
Sbjct: 590 IIGHSTGEMGCGYADGGITREQTMRLAYH 618
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 59 SKPVSQRTDKRVNTLCSLF 115
S P Q DKRV LC LF
Sbjct: 1603 SSPSEQPFDKRVQELCDLF 1621
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 59 SKPVSQRTDKRVNTLCSLF 115
S P Q DKRV LC LF
Sbjct: 1603 SSPSEQPFDKRVQELCDLF 1621
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 59 SKPVSQRTDKRVNTLCSLF 115
S P Q DKRV LC LF
Sbjct: 1603 SSPSEQPFDKRVQELCDLF 1621
>AF016681-2|AAY55841.1| 184|Caenorhabditis elegans Hypothetical
protein F22E5.21 protein.
Length = 184
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 13 FGTRAVLIVAAGTGEFEAGISKNGQTREHALLAFHTRSHATDCTSKQ 153
FG + LIV+ G+ + ++ + + +LAF T D KQ
Sbjct: 62 FGDKKQLIVSVNPGKCNIIVYRSHEWSDSPMLAFETVKTEVDTACKQ 108
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,562,712
Number of Sequences: 27780
Number of extensions: 70936
Number of successful extensions: 281
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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