Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E15
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   4.3  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   4.3  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    24   9.8  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    24   9.8  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    24   9.8  
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    24   9.8  

>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 333 TSVPTLTRPANFTTSAAEIH 392
           T +P    PA FT SAA IH
Sbjct: 337 TKIPFPQLPAGFTMSAANIH 356


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 321 TPMTTSVPTLTRPANFTTSAAEI 389
           T    S+P L +P+NF +S+ E+
Sbjct: 360 TSSNLSIPVLQKPSNFHSSSTEL 382


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -1

Query: 190 QRSSVGQGQRTSVAYCQGSGMTQEPVGISTGQQSARGR 77
           QR + G+   TSVA   GS         +    SAR R
Sbjct: 295 QRKAAGKADNTSVAAAAGSEALAATTATNASPFSARSR 332


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 388 ISAALVVKFAGRVNVGTDV 332
           I+ +   +F G VNVGTDV
Sbjct: 78  IAESTQFRFLGNVNVGTDV 96


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 130 CRSLGSRPRW 159
           CR+LGSR RW
Sbjct: 174 CRALGSRARW 183


>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 206

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 90  LCWPVLMPTGSWVMPLPWQ 146
           + WP       W+MPL +Q
Sbjct: 154 MVWPFFQTVNFWLMPLQYQ 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,903
Number of Sequences: 5004
Number of extensions: 5720
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)