Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E14
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   258   2e-69
U29244-12|AAC71093.3|  604|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    29   2.4  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    29   2.4  
AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     27   7.5  
Z77660-4|CAB01172.1|  501|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  258 bits (632), Expect = 2e-69
 Identities = 112/161 (69%), Positives = 138/161 (85%)
 Frame = +2

Query: 11  EAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYP 190
           E K+AFV+RIRG+NQ+ PK RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWGYP
Sbjct: 82  EHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYP 141

Query: 191 NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYAS 370
           N K++ +L+YKRG+AK++G RVPIT N+++E+ L K NIIC+EDL HEI TVG  FK A+
Sbjct: 142 NNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEAT 201

Query: 371 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDNVNELLRR 493
           NFLWPFKLNNPTGGW KKT H+V+GGDFGNRED +N LLR+
Sbjct: 202 NFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRK 242


>U29244-12|AAC71093.3|  604|Caenorhabditis elegans Hypothetical
           protein ZK1248.13 protein.
          Length = 604

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
 Frame = -2

Query: 490 PEELVDIVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDS-KYLM----D 326
           P+  +D+ LA  +  A++ +NR L  T  R   F   Q V+   EL +D  +Y+     D
Sbjct: 440 PQSTIDVSLAHHKTNAIEKMNRALR-TKLRFFVFTLEQVVSHFRELFSDKVRYVFRTARD 498

Query: 325 EILNADDVLFAKSLLDE*VGGDR-DTLPVQFGETAFVHQLSD 203
           +I+NA  +   ++ + +  G  +   L V+ G    VH+  D
Sbjct: 499 QIVNATSLKQVENAITD--GHKKLSDLVVRIGIRRLVHENMD 538


>Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical
           protein C17G1.3a protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 293 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTI 430
           +KQ II  ++ + EIF+  EKF   SN +W  +++NP   W    I
Sbjct: 71  AKQIIIDADEEVVEIFSQTEKF--LSN-MWTMEMSNPLMMWMNPRI 113


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform b
            protein.
          Length = 1250

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 23/89 (25%), Positives = 40/89 (44%)
 Frame = -2

Query: 487  EELVDIVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDSKYLMDEILNAD 308
            ++ + +V   TE+  VD +  L   T S  ++F    E+  +    T+ ++ +   L A 
Sbjct: 915  DKKLKVVNVATELERVDHILPLRYATISHKIEFS--DEIKFIDGSKTNLQWTLSPPLEAG 972

Query: 307  DVLFAKSLLDE*VGGDRDTLPVQFGETAF 221
             VLF  S+  E +GG    +     ET F
Sbjct: 973  TVLFKVSIFREKMGGQDPPIITIQSETNF 1001


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 23/89 (25%), Positives = 40/89 (44%)
 Frame = -2

Query: 487  EELVDIVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDSKYLMDEILNAD 308
            ++ + +V   TE+  VD +  L   T S  ++F    E+  +    T+ ++ +   L A 
Sbjct: 915  DKKLKVVNVATELERVDHILPLRYATISHKIEFS--DEIKFIDGSKTNLQWTLSPPLEAG 972

Query: 307  DVLFAKSLLDE*VGGDRDTLPVQFGETAF 221
             VLF  S+  E +GG    +     ET F
Sbjct: 973  TVLFKVSIFREKMGGQDPPIITIQSETNF 1001


>AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical
           protein T01A4.3 protein.
          Length = 710

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 293 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPT 406
           S+Q+  C    +H +  + ++F +    LW  +++NPT
Sbjct: 361 SRQSTKCDPRSLHTLMGLAQRFGFDYLILWAARIDNPT 398


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 475 DIVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLE 356
           DI+  VT + AVD        T+S++V F+W +  +  LE
Sbjct: 364 DIMGKVTSLMAVDQKAIFAGTTTSQIVMFKWDEHHSNQLE 403


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 475 DIVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLE 356
           DI+  VT + AVD        T+S++V F+W +  +  LE
Sbjct: 366 DIMGKVTSLMAVDQKAIFAGTTTSQIVMFKWDEHHSNQLE 405


>Z77660-4|CAB01172.1|  501|Caenorhabditis elegans Hypothetical
           protein F38H4.4 protein.
          Length = 501

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -2

Query: 421 LAPTSSRVVQFEWPQEVTCVLELLTDSKY 335
           L  TS+   Q    Q V CVL LLTDS+Y
Sbjct: 270 LPHTSADFWQMIIEQRVKCVLLLLTDSEY 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,428,003
Number of Sequences: 27780
Number of extensions: 202343
Number of successful extensions: 653
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)