Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_E12
(497 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 30 0.22
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 0.29
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 27 1.2
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 27 1.2
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.2
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 27 1.6
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 27 2.1
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma... 27 2.1
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 3.6
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 3.6
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 3.6
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 3.6
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 3.6
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 3.6
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 26 3.6
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 3.6
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 3.6
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 3.6
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 3.6
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 3.6
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ... 25 4.8
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 6.3
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 25 8.4
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 8.4
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 29.9 bits (64), Expect = 0.22
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 308 SNVNLGNLTSTRRSRKLFISTRRS 237
SNVNLG S +R+R+ F+ST S
Sbjct: 175 SNVNLGTRKSRKRTREYFVSTAES 198
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 29.5 bits (63), Expect = 0.29
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 428 DNLSASRTSCPRANPGNEAVPSKACLTPNSLSTPFKRDVYSNVNL 294
+N+S S + GNEAV SK P L PF+ V N+
Sbjct: 948 ENISTSVADVSLSQAGNEAVLSKKACKPLVLIDPFEEKVLKAFNM 992
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.5 bits (58), Expect = 1.2
Identities = 21/100 (21%), Positives = 41/100 (41%)
Frame = +1
Query: 37 KPGPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPYRSNKYAMYIIVPNSLTGLP 216
KPGP YV+ S K + ++ Y S+ +L + N I+ +S +
Sbjct: 291 KPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVK 350
Query: 217 RVLNSLSDLRVEMNNLRERLVDVRLPKFTFEYTSRLNGVL 336
+ L+ + + + +L + R FE+ + G+L
Sbjct: 351 YMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGIL 390
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 27.5 bits (58), Expect = 1.2
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -1
Query: 431 CD-NLSASRTSCPRANPGNEAVPSKACLTPNSLSTPFKRDVYSNVNLGNLTSTRRSRKLF 255
CD N ++ T A + S + L+ + S P K SNV ++S RRSRK
Sbjct: 459 CDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMPHKPASQSNVGPVRISSNRRSRKFS 518
Query: 254 ISTRRSL 234
S+R S+
Sbjct: 519 SSSRVSV 525
>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 125
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -1
Query: 368 PSKACLTPNSLSTPFKRDVYSNVNLGNLTSTRRSRKLFISTRRSLKLFRTRGKPVREL 195
PSK C++ L+TP S + TS +RSR + + R R + +R +
Sbjct: 37 PSKLCISSEKLNTPMHNRSRSGIK--KHTSVKRSRSFKLFDTLFFGILRLRKQRIRSV 92
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 27.1 bits (57), Expect = 1.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 350 TPNSLSTPFKRDVYSNVNLGNLTSTRRSRKLFISTRRSLKLFRTR 216
T + TP D S N+G+ +TR S+ L RRS FR R
Sbjct: 77 TDENPDTPSNLDSPSTQNVGSTNNTRASQSLL---RRSSSFFRRR 118
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 2.1
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Frame = +1
Query: 1 ARGRHQFPPNMTKPGPFYVSPKSPKSVEFMNVIDHFYYTESSNFDA---KILRMPYRSNK 171
A G H + N+ + V P + S F + I+ F S + ++ MP+
Sbjct: 292 AAGSHVYI-NIPSLSYWQVHPFTLASAPFDDFIELFVAVHSGFTERLANRLYSMPHEYPN 350
Query: 172 YAMYIIVPNSLTGLPRVLNSLSDLRVEMNN 261
+++ P SL+ R LNS VE+ N
Sbjct: 351 FSLAPGTPESLSNTYRELNSFKSYAVEIEN 380
>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 26.6 bits (56), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 37 KPGPFYVSPKSPKSVEFMNVIDHFY 111
K PFY P + + VEF ++++ Y
Sbjct: 16 KQSPFYAVPSNYEEVEFSSIVEPMY 40
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 43 GPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPYRSNKYAMYIIVPNSLTG 210
GPFYV KS + +++ D + SS F L YR N Y + S G
Sbjct: 1220 GPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLE-KYRHNSELNYATIDESDIG 1274
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 43 GPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPYRSNKYAMYIIVPNSLTG 210
GPFYV KS + +++ D + SS F L YR N Y + S G
Sbjct: 1220 GPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLE-KYRHNSELNYATIDESDIG 1274
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 43 GPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPYRSNKYAMYIIVPNSLTG 210
GPFYV KS + +++ D + SS F L YR N Y + S G
Sbjct: 1220 GPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLE-KYRHNSELNYATIDESDIG 1274
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 43 GPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPYRSNKYAMYIIVPNSLTG 210
GPFYV KS + +++ D + SS F L YR N Y + S G
Sbjct: 1220 GPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLE-KYRHNSELNYATIDESDIG 1274
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 43 GPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPYRSNKYAMYIIVPNSLTG 210
GPFYV KS + +++ D + SS F L YR N Y + S G
Sbjct: 1220 GPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLE-KYRHNSELNYATIDESDIG 1274
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 43 GPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPYRSNKYAMYIIVPNSLTG 210
GPFYV KS + +++ D + SS F L YR N Y + S G
Sbjct: 1220 GPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLE-KYRHNSELNYATIDESDIG 1274
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 223 LNSLSDLRVEMNNLRERLVDVR---LPKFTFEYTSRLNGVL 336
+NS+ L + N +ERL+D R + KFT Y L+ ++
Sbjct: 508 INSMVGLLLLTKNYQERLMDSRIDAISKFTHSYLKSLSEII 548
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 43 GPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPYRSNKYAMYIIVPNSLTG 210
GPFYV KS + +++ D + SS F L YR N Y + S G
Sbjct: 1220 GPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLE-KYRHNSELNYATIDESDIG 1274
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 43 GPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPYRSNKYAMYIIVPNSLTG 210
GPFYV KS + +++ D + SS F L YR N Y + S G
Sbjct: 1220 GPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLE-KYRHNSELNYATIDESDIG 1274
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 43 GPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPYRSNKYAMYIIVPNSLTG 210
GPFYV KS + +++ D + SS F L YR N Y + S G
Sbjct: 1220 GPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLE-KYRHNSELNYATIDESDIG 1274
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 43 GPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPYRSNKYAMYIIVPNSLTG 210
GPFYV KS + +++ D + SS F L YR N Y + S G
Sbjct: 1220 GPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLE-KYRHNSELNYATIDESDIG 1274
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 43 GPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPYRSNKYAMYIIVPNSLTG 210
GPFYV KS + +++ D + SS F L YR N Y + S G
Sbjct: 1220 GPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLE-KYRHNSELNYATIDESDIG 1274
>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +1
Query: 262 LRERLVDVRLPK----FTFEYTSRLNGVLRELGVRQAFEG 369
LRE L+++R FT Y N VL+ LG+ F+G
Sbjct: 95 LREMLLELRKKYKCWIFTNAYIVHANRVLKYLGIEDCFDG 134
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 386 PGNEAVPSKACLTPN 342
PGNEA+PS + + PN
Sbjct: 280 PGNEALPSHSSVPPN 294
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 449 PHVCRTCDNLSASRTSCP 396
P VCRTC + + ++CP
Sbjct: 148 PRVCRTCHTDTHTSSTCP 165
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = -3
Query: 156 WHPQNLSVKITRFSVIEVIYNVHELHGLW*FRRYVEW 46
W + +++ ++I + H+L G W + R EW
Sbjct: 1160 WSSETINILYQHKGYTKLIMSWHDLSGTWSWARPHEW 1196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,333
Number of Sequences: 5004
Number of extensions: 37113
Number of successful extensions: 139
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -