Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_E12
(497 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0044 - 25150322-25151260 60 7e-10
11_02_0011 - 7337618-7338496,7338596-7338991 60 1e-09
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 54 8e-08
01_06_0824 - 32243495-32244319,32244449-32244859 50 8e-07
11_02_0012 - 7346282-7347136,7347234-7347593 50 1e-06
11_01_0767 + 6438648-6438809,6439146-6440000 44 9e-05
01_01_1152 + 9170628-9171899 42 2e-04
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941... 35 0.042
04_04_0620 + 26656072-26656417,26656585-26657396 34 0.055
11_01_0771 + 6453130-6454488 34 0.073
04_04_0619 + 26652923-26653267,26653440-26654273 32 0.22
05_03_0392 - 13432385-13432622,13432734-13433104 31 0.51
05_03_0074 + 8095355-8096575,8096664-8096901,8096990-8097667,809... 31 0.51
10_07_0087 - 12762745-12763236 29 1.6
03_05_0820 + 27951971-27954236,27954746-27955008,27955169-279552... 29 2.1
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 29 2.1
12_02_1107 - 26138512-26138625,26138728-26138763,26139843-261399... 29 2.7
04_04_1658 - 35119623-35119754,35121033-35121121,35121205-351215... 29 2.7
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 28 3.6
03_05_0288 + 22761801-22761877,22762495-22762556,22763501-227635... 28 3.6
01_06_0493 + 29773536-29773582,29774209-29774260,29774405-29776405 28 3.6
05_02_0124 + 6849034-6851502 27 8.4
>05_06_0044 - 25150322-25151260
Length = 312
Score = 60.5 bits (140), Expect = 7e-10
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 18/178 (10%)
Frame = +1
Query: 13 HQFPPNMTKPGPFYVSPKSPKSVEFM-NVIDHFYYTESSNFDAKILRMPYRS-------N 168
H F P++T+ G F+VSP V FM H + + +LRM YR+
Sbjct: 92 HPFFPHLTEEGDFHVSPDHDVRVPFMAGSHQHAFMDVGCHPGFNVLRMMYRTGGAAGGDK 151
Query: 169 KYAMYIIVPNSLTGLPRVLNSLSDLRVEMNNLRERLV--------DVRLPKFTFEYTSRL 324
+AMYI +P+ GLP + L+ LR +V ++++PKF
Sbjct: 152 MFAMYIYLPDDRDGLPELARKLASNPAAF--LRRTIVPAQPVAVGELKIPKFEVSLKVEA 209
Query: 325 NGVLRELGVRQAFEGTA--SFPGLARGQLVREALRLSHVLQTCGIEVNEVGSIAYAAT 492
+ +LRE G+ F A SF G+ + +S +L C + VNE G++A A T
Sbjct: 210 SRLLREFGLDLPFLPAADNSFSGMLLDP--PQGTAVSSLLHQCFVNVNEEGTVAAAGT 265
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 60.1 bits (139), Expect = 1e-09
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
Frame = +1
Query: 175 AMYIIVPNSLTGLPRVLNSL-------SDLRVEMNNLRERLVDVRLPKFTFEYTSRLNGV 333
+MYI +P+ GLP +++ + S LR R + D+R+P+F + S++NGV
Sbjct: 263 SMYIFLPDERDGLPALVDKMAASSSSSSFLRDHRPTRRREVGDLRVPRFKVSFYSQINGV 322
Query: 334 LRELGVRQAFE-GTASFPGLARGQLVR-EALRLSHVLQTCGIEVNEVGSIAYAAT 492
L+ +GV AF+ G A G+A G R L + V +EVNE G+ A A+T
Sbjct: 323 LQGMGVTAAFDAGEADLSGMAEGVDQRGGGLVVEEVFHRAVVEVNEEGTEAAAST 377
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 53.6 bits (123), Expect = 8e-08
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Frame = +1
Query: 16 QFPPNMTKPGPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPYRSN----KYAMY 183
+F + TK G F++ FM+ Y N K+L++PY+ +++MY
Sbjct: 259 KFDASKTKDGEFHLLDGKSVQAPFMSTSKKQYILSYDNL--KVLKLPYQQGGDKRQFSMY 316
Query: 184 IIVPNSLTGLPRVLNSL-SDLRVEMNNLRERLVDV---RLPKFTFEYTSRLNGVLRELGV 351
I++P + GL + L S+ ++ R V V +LPKF + + +L+ LG+
Sbjct: 317 ILLPEAQDGLWSLAEKLNSEPEFLEKHIPTRQVTVGQFKLPKFKISFGFEASDLLKSLGL 376
Query: 352 RQAFEGTASFPGLARGQLVREALRLSHVLQTCGIEVNEVGSIAYAAT 492
F A + + L +S V +EVNE G+ A AAT
Sbjct: 377 HLPFSSEADLTEMVDSPEGKN-LFVSSVFHKSFVEVNEEGTEAAAAT 422
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 50.4 bits (115), Expect = 8e-07
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 21/180 (11%)
Frame = +1
Query: 16 QFPPNMTKPGPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPY-RSNK------- 171
+F T FY+ S FM+ Y + + K+LR+PY R +
Sbjct: 187 KFDARSTSDDVFYLPDGGHVSAPFMSSGKWQYIACRAGY--KVLRLPYARGGRGRGRDTG 244
Query: 172 --YAMYIIVPNSLTGLPRVLNSL-SD--LRVEMNNLRERLVDV---RLPKFTFEYTSRLN 327
++MYI +P+ GLP +L L SD +E + V V +P+FT Y +
Sbjct: 245 RLFSMYIYLPDERHGLPDMLRKLCSDPAALIESSAALTEKVPVGAFMVPRFTLSYKTNAA 304
Query: 328 GVLRELGVRQAFEGTASFPGLARGQLVR-----EALRLSHVLQTCGIEVNEVGSIAYAAT 492
LR+LG+R FE +PG ++V E + +S V +EVNE G+ A AAT
Sbjct: 305 ETLRQLGLRLPFE----YPGADLSEMVESSPEAEKIVVSAVYHESFVEVNEEGTEAAAAT 360
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 49.6 bits (113), Expect = 1e-06
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 12/118 (10%)
Frame = +1
Query: 175 AMYIIVPNSLTGLPRVLNSL----------SDLRVEMNNLRE-RLVDVRLPKFTFEYTSR 321
+MYI +P++ GLP +++ + S LR R ++ D+R+P+F + S
Sbjct: 243 SMYIFLPDARDGLPALVDKMAVASSGTASSSFLRDHRPGRRRIKVGDLRVPRFKVSFYSE 302
Query: 322 LNGVLRELGVRQAFE-GTASFPGLARGQLVREALRLSHVLQTCGIEVNEVGSIAYAAT 492
+N VL+ +G+ AF+ G G+ G+LV + V+ +EVNE G+ A AAT
Sbjct: 303 MNEVLKGMGIGAAFDVGKVDLSGMIDGELV----VVEKVMHRAVVEVNEEGTEAAAAT 356
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 43.6 bits (98), Expect = 9e-05
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Frame = +1
Query: 133 DAKILRMPYRSNKYAMYIIVPNSLTGLPRVLNSL-SDLRVEMNNLRERLVDV---RLPKF 300
D L++ Y +AM + +P+ GLP +L+ + + +L V V R+PKF
Sbjct: 156 DTYNLKLRYSLPSFAMLVFLPDDRDGLPGLLDRITASPEFVDEHLPPGCVPVGRFRVPKF 215
Query: 301 TFEYTS-RLNGVLRELGVRQAFE-GTASFPGLA-RGQLVREALRLSHVLQTCGIEVNEVG 471
+ + VLR LG+R F+ A G+A G A+ +S V+ +EVNE G
Sbjct: 216 KLAFCHYGIADVLRGLGLRLPFDMFAAEMSGIAVEGDGEDAAMFVSSVIHKVVVEVNEEG 275
Query: 472 SIAYAATQ 495
S A A T+
Sbjct: 276 SEAAAYTE 283
>01_01_1152 + 9170628-9171899
Length = 423
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/68 (35%), Positives = 38/68 (55%)
Frame = +1
Query: 289 LPKFTFEYTSRLNGVLRELGVRQAFEGTASFPGLARGQLVREALRLSHVLQTCGIEVNEV 468
+PKF F + +R+LGV +AF G F G+ G + L ++ V IEV+E+
Sbjct: 314 VPKFKFSFKFEAKSDMRKLGVTRAFAG-GDFSGMVTG---GDGLFIAEVYHQATIEVDEL 369
Query: 469 GSIAYAAT 492
G++A A+T
Sbjct: 370 GTVAAAST 377
>01_04_0068 +
15693131-15693533,15693604-15693803,15693879-15694162,
15694251-15694428
Length = 354
Score = 34.7 bits (76), Expect = 0.042
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Frame = -1
Query: 464 SLTSMPHVCRTCDNLSASRTSCPRANPGNEAVPSKACLTPNSLSTPFKRDV-YSNVNLGN 288
S TS C + D +S S T+CP K L P S D N G
Sbjct: 104 SSTSTVSACTSQDKVSPSSTACPHKGNEEGEREVKRQLKPRSPEKKIPIDPSVKNFFKGM 163
Query: 287 LTSTRRSRKLFISTRRSLKLFRTRGKPVRELG 192
T+ + + KL R K + + KPV +LG
Sbjct: 164 STTNKEALKLSDYDRTLQKAYHKKSKPVPQLG 195
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 34.3 bits (75), Expect = 0.055
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +1
Query: 265 RERLVDVRLPKFTFEYTSRLNGVLRELGVRQAFEGTASFPGLARGQLVREALRLSHVLQT 444
R+ + ++PKF F G L +LG+ F+ A+ L +S + Q
Sbjct: 256 RQIVTPCKVPKFKFSSQLDAGGALAQLGLGAPFDPDAADLSRMAVNTPPAGLYVSTMRQK 315
Query: 445 CGIEVNEVGSIAYAA 489
C +EV+E G+ A A
Sbjct: 316 CAVEVDEEGTTAVEA 330
>11_01_0771 + 6453130-6454488
Length = 452
Score = 33.9 bits (74), Expect = 0.073
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Frame = +1
Query: 169 KYAMYIIVPNSLTGLPRVLNSLSD----LRVEMNNLRERLV-DVRLPKFTFEYTSRLNGV 333
+YAM I +P++ GL ++ ++ L M V + R+PKF + G
Sbjct: 293 RYAMAIFLPDARDGLRGLVERMASRPGFLHEHMPAAWPVPVGEFRVPKFKVSCGGSVVGA 352
Query: 334 LRELGVRQAFE-GTASFPGLARGQLVREALRLSHVLQTCGIEVNEVGSIAYAAT 492
L +LG+R F A + L + + IEVNE G++A AAT
Sbjct: 353 LEQLGLRLPFSPELADLSDMVEDDGSGWPLFVGDIQHKAVIEVNEEGTVAAAAT 406
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 32.3 bits (70), Expect = 0.22
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 289 LPKFTFEYTSRLNGVLRELGVRQAFEGTAS-FPGLARG-QLVREALRLSHVLQTCGIEVN 462
+PKF F G L +LG+ F+ A+ +A E L +S + Q C +EV+
Sbjct: 271 VPKFKFSSELDARGALAKLGLGAPFDPLAADLSRMAVSVNTPPERLYVSAMRQKCAVEVD 330
Query: 463 EVGSIAYAAT 492
E G+ A AT
Sbjct: 331 EEGTTAVEAT 340
>05_03_0392 - 13432385-13432622,13432734-13433104
Length = 202
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -1
Query: 368 PSKACLTPNSLSTPFKRDVYSNVNLGNLTSTRRSRK 261
PS A P+S S+P V V++G+L+ST+ RK
Sbjct: 142 PSAAAALPSSTSSPLLLVVVGAVSMGSLSSTKSRRK 177
>05_03_0074 +
8095355-8096575,8096664-8096901,8096990-8097667,
8097787-8097974
Length = 774
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/52 (26%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +1
Query: 124 SNFDAKIL-RMPYRSNKYAMYIIVPNSLTGLPRVLNSLSDLRVEMNNLRERL 276
S+FD + + ++P++ N+Y +++P + G+ RV +S++ ++ N LR ++
Sbjct: 691 SDFDVEEMNQLPFQLNRYISDVVLPVATAGVERVFSSMNYIK---NKLRSKM 739
>10_07_0087 - 12762745-12763236
Length = 163
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -1
Query: 398 PRANPGNEAVPSKACLTPNSLSTPFKR-DVYSNVNLGNLTSTRRSRKLFISTRRSLKLFR 222
P A P + P A + + LS P Y ++ L N RRS + I RSL++ R
Sbjct: 93 PMAPPKSSPAPPPA-VGHHRLSPPHDAAGNYDHLELANYGGVRRSTSIIIIIHRSLRMAR 151
Query: 221 TRGKP 207
T P
Sbjct: 152 TATVP 156
>03_05_0820 +
27951971-27954236,27954746-27955008,27955169-27955288,
27957790-27957856,27958310-27958515
Length = 973
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Frame = +1
Query: 271 RLVDVRLPKFTFEYTSRLNGVLRELGVRQAFE------------GTASFPGLARGQLVRE 414
RL D + YT+ ++ +++ VR A E TA G +L ++
Sbjct: 169 RLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKD 228
Query: 415 ALRLSHVLQTCGIEVNEV 468
AL + H + +CG+ NE+
Sbjct: 229 ALGVFHEMLSCGVSPNEI 246
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 29.1 bits (62), Expect = 2.1
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Frame = +1
Query: 10 RHQFPPNMTKPGPFYVSPKSPKSVEFMNVIDHF--YYTESSNFDAKILRMPYRSNKYAMY 183
R P+ +PG FY P+SP+ + M ++ F YY + F + LR R ++
Sbjct: 268 RDYLVPSRVQPGMFYALPQSPQLFKQMLMVSGFEKYYQIARCFRDEDLRAD-RQPEFTQ- 325
Query: 184 IIVPNSLTGLPRVLNSLSDLRVEMNNLRERLVDVRLPK-F-TFEYTSRLN 327
+ + + T + +L +L M ++ + + D++LP F YT +N
Sbjct: 326 LDMEIAFTSMEDMLKLNEEL---MRHIFQEVGDIKLPNPFPRLTYTEAMN 372
>12_02_1107 -
26138512-26138625,26138728-26138763,26139843-26139990,
26140488-26140615,26140768-26140903,26141650-26141739,
26142074-26142282
Length = 286
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 312 IFKCEFGQSDIYQTFP*VVHFNTEVAQAI*NARQTRQRVRNNDIHRVFVTS 160
I+ +F + I Q FP +V + + + Q RV +D+ + FVTS
Sbjct: 179 IYLSQFAMNSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQKPFVTS 229
>04_04_1658 -
35119623-35119754,35121033-35121121,35121205-35121599,
35122009-35122091,35122163-35124184,35124859-35124927,
35125050-35125130,35125215-35125308,35125435-35125499,
35125961-35126038,35126115-35126360
Length = 1117
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 337 RELGVRQAFEGTASFPGLARGQLVREALRLSHVLQTCGIEVNEVGSIA 480
RE+ R TA G+ + REA+ L +Q G+E +EV +A
Sbjct: 589 REMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLA 636
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 28.3 bits (60), Expect = 3.6
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 184 IIVPNSLTGLPRVLNSLSDLRVEMNNLRERLVDVRLPKFTF-EYTSRLNGVLRELGVR 354
+ V +TGL + L+ L+ VE NNLRE+L + K E RL V EL R
Sbjct: 736 LAVSEKITGLEKKLHYLN---VEENNLREKLRRLESEKSNIEEEIDRLEPVKEELETR 790
>03_05_0288 +
22761801-22761877,22762495-22762556,22763501-22763564,
22767651-22767720,22767958-22768041
Length = 118
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 22 PPNMTKPGPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRM 153
PP + + GPF V+P+ P+S + + S +D K L +
Sbjct: 4 PPPLPRGGPFVVAPRPPRSGVSKPFVGEVLVGKISGYDEKGLHV 47
>01_06_0493 + 29773536-29773582,29774209-29774260,29774405-29776405
Length = 699
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 331 VLRELGVRQAFEGTASFPGLARGQLVREALRLSHVLQTCGIEVNEV 468
V +G R + T++ GLA + R+ L L +++ G+E N V
Sbjct: 384 VFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGV 429
>05_02_0124 + 6849034-6851502
Length = 822
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 340 ELGVRQAFEGTASFPGLARGQLVREALRLSHVLQTCGIEVNEVGSIA 480
EL R T+ GLA+ AL L H + G++ N+V IA
Sbjct: 510 ELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIA 556
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,540,355
Number of Sequences: 37544
Number of extensions: 229694
Number of successful extensions: 697
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -