Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E10
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    47   2e-06
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    41   1e-04
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      39   3e-04
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    29   0.48 
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   1.9  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    27   1.9  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    26   2.6  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    26   3.4  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   3.4  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   4.5  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   4.5  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   5.9  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   5.9  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   5.9  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    25   7.8  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   7.8  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
 Frame = +2

Query: 206 SEELAQESLEWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQSNMVKKVNVSKMA 385
           + +L +E+ EWI        N   D+    + L+ G +LC++        ++    S M 
Sbjct: 2   TSQLEKEAREWIEETLHTKLNAQLDL---LDQLQSGVILCRICKEALGANIR-YKESNMP 57

Query: 386 FKCMENINAFLEAARQ-LGVPAQETFQTVDLW 478
           F  MENI+AF+  A+Q + VP+Q+ FQT DL+
Sbjct: 58  FVQMENISAFINYAQQVVHVPSQDMFQTSDLF 89


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
 Frame = +2

Query: 134 KMANNRATKSGFAAEAQRKINSKYSEELAQESLEWIR-VITGEPE-----NISGDMDNFY 295
           ++   R T  G ++     IN    EE  +E ++ I  V+ G+P+      I+ +   F+
Sbjct: 91  EVKKGRITIKGSSSSVSHTIN----EEERREFIKHINSVLAGDPDVGSRVPINTETFEFF 146

Query: 296 EVLKDGTLLCKLVN-----TIQSNMVKKVNVSKMA--FKCMENINAFLEAARQLG 439
           +  KDG +L KL+N     TI   ++ K   +K    FKC+EN N  + +A+ +G
Sbjct: 147 DQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +2

Query: 224 ESLEWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQSNMVKKVNVS-KMAFKCME 400
           E+ +WI    G      G    F + L++G +L  LV   Q + + K+  S ++ F+  +
Sbjct: 46  EAKKWIEECLGTD---LGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSD 102

Query: 401 NINAFLEAARQLGVPAQETFQTVDLW 478
           NIN FL+    +G+P    F+  D++
Sbjct: 103 NINKFLDFIHGIGLPEIFHFELTDIY 128


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
 Frame = +2

Query: 125 VLNKMANNRATKSGFAAEAQRKINSKYSEELAQESL----EWIRVITGEPENISGDMDNF 292
           ++ K  N+   K    ++  +++ ++ ++ LA   L    E  + +  E  N   ++D+F
Sbjct: 29  MIQKFENHYVFKKDMKSKRNKEVKNQMNDWLAYGYLCSVHEAKKWLEEETNNEYQNLDDF 88

Query: 293 YEVLKDGTLLCKLV----NTIQSNMVKKVNVSKMAFKCMENINAFLEAARQLGVPAQETF 460
            + L +G +LC+L       + SN   +  +S+   +    +NAF      +G+     F
Sbjct: 89  VDALVNGKVLCQLAFKYYPKLASNWKPRYQISE---RNTVYLNAFFHFLDFIGMFTPFRF 145

Query: 461 QTVDL 475
           +T DL
Sbjct: 146 ETKDL 150


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -3

Query: 477  HRSTVWNVS*AGTPSCRAASRNALMFSM 394
            ++S +W +  +G P+C+    + L+FS+
Sbjct: 947  YKSGIWKLVLSGLPNCKTVFEHLLLFSL 974


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 259 FAGDNSDPFQRLLGKFFAVFTVDLSL-RFC 173
           F GDNS  +   +  F A+F + L +  FC
Sbjct: 269 FVGDNSSEYLEFVATFMALFMIGLGIFNFC 298


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 270 MFSGSPVITRIHSNDSWASSSLYLLLIFLCAS-AANPDLVARLLAIL 133
           ++SG+  +  I    S A  ++Y+L ++  AS AA+ D  AR L +L
Sbjct: 43  LYSGAKTLFEIEQTGSAADLAIYMLDVYEKASYAASLDNKARALTLL 89


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 330 SLHNNVPSLSTS*KLSISPEMFSGSPVITRIHSNDSWASSSLY 202
           S  ++VP+LST     IS E+F GS    +I SN+ ++  + Y
Sbjct: 680 SYQSDVPNLSTK---IISVELFEGSHSNEKIDSNEIYSRHNDY 719


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 398 ENINAFLEAARQLGVPAQETFQTVDLW 478
           E + AF+E A+Q G+P  E       W
Sbjct: 131 EELQAFIEEAKQQGIPIDENATKKKSW 157


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 332 VNTIQSNMVKKVNVSKMAFKCMENINAFLEAARQL 436
           V    SN++K+ +V K   K  ENI+ F+E  + +
Sbjct: 64  VRACSSNVMKRPSVVKSRKKGSENISNFMEKTKAI 98


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 288 LSISPEMFSGSPVITRIHSNDSWASSS 208
           L +SPE+FS + V  RI +   W  S+
Sbjct: 372 LGVSPELFSQNLVRPRIKAGHEWVISA 398


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 168 LPQKRRERSTVNTAKNLPRSRWN 236
           +PQ + +   V+ AKN+P+ ++N
Sbjct: 92  IPQLKNKNDEVSQAKNIPKMKFN 114


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 372 YPRWRSNAWKTL 407
           YPRW  N WK L
Sbjct: 24  YPRWTFNKWKAL 35


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 393 AWKTLTHSSRQRGNSACRLKK 455
           AWK L    RQRGN    ++K
Sbjct: 169 AWKMLGECHRQRGNGRVNIEK 189


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 281 MDNFYEVLKDGTLLCKLVNTIQSNMVKKVNVSKM 382
           + N    L +  +  +LV  ++SN+ KK+NVS +
Sbjct: 32  LKNICTALLETDVNVRLVQELRSNIKKKINVSTL 65


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 192 STVNTAKNLPRSRWNGSELSPAN-PKTFPV 278
           S+ NTA N P S  N SE +  N P T+P+
Sbjct: 382 SSANTAPNSPTSA-NSSEGNQGNGPTTYPI 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,040
Number of Sequences: 5004
Number of extensions: 42126
Number of successful extensions: 134
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)