SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E10
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-6|CAB02104.1|  192|Caenorhabditis elegans Hypothetical pr...   115   2e-26
AF169201-2|AAF01679.1|  192|Caenorhabditis elegans CPN-1 protein.     115   2e-26
U97013-5|AAB52338.1|  142|Caenorhabditis elegans Calponin protei...   113   8e-26
AF039711-7|AAB96713.3|  154|Caenorhabditis elegans Calponin prot...    97   8e-21
AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin prot...    72   2e-13
U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav (...    41   5e-04
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (...    41   5e-04
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.      41   5e-04
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      33   0.081
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    33   0.081
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p...    33   0.14 
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p...    33   0.14 
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin...    33   0.14 
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr...    33   0.14 
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr...    33   0.14 
U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical pr...    32   0.19 
Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical p...    28   4.0  
Z82268-10|CAB05202.1|  972|Caenorhabditis elegans Hypothetical p...    28   4.0  
Z81552-4|CAB04488.2|  765|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical ...    28   4.0  
AL021476-1|CAA16317.1|  972|Caenorhabditis elegans Hypothetical ...    28   4.0  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    27   7.0  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      27   7.0  
AF067613-5|AAN73864.1|  266|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z95623-1|CAB09133.1|  314|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z81525-7|CAE17780.1|  263|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AC087081-8|AAY55899.1|  499|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z79755-6|CAB02104.1|  192|Caenorhabditis elegans Hypothetical
           protein F43G9.9 protein.
          Length = 192

 Score =  115 bits (276), Expect = 2e-26
 Identities = 57/113 (50%), Positives = 78/113 (69%)
 Frame = +2

Query: 140 ANNRATKSGFAAEAQRKINSKYSEELAQESLEWIRVITGEPENISGDMDNFYEVLKDGTL 319
           +++RA KSG A EAQ+KI  KY + LA E L+W++ +TG+  +  GD DN  +V +DG+L
Sbjct: 6   SSDRAEKSGIALEAQQKIYEKYDKNLAGEILQWVQNVTGQSFDTQGDADNLVKVFQDGSL 65

Query: 320 LCKLVNTIQSNMVKKVNVSKMAFKCMENINAFLEAARQLGVPAQETFQTVDLW 478
           LC L N+++   VKKVN S MAFK MENI+ FL+ A +  V   E FQTVDL+
Sbjct: 66  LCTLANSLKPGSVKKVNTSAMAFKKMENISFFLKFAEEY-VQKSELFQTVDLY 117


>AF169201-2|AAF01679.1|  192|Caenorhabditis elegans CPN-1 protein.
          Length = 192

 Score =  115 bits (276), Expect = 2e-26
 Identities = 57/113 (50%), Positives = 78/113 (69%)
 Frame = +2

Query: 140 ANNRATKSGFAAEAQRKINSKYSEELAQESLEWIRVITGEPENISGDMDNFYEVLKDGTL 319
           +++RA KSG A EAQ+KI  KY + LA E L+W++ +TG+  +  GD DN  +V +DG+L
Sbjct: 6   SSDRAEKSGIALEAQQKIYEKYDKNLAGEILQWVQNVTGQSFDTQGDADNLVKVFQDGSL 65

Query: 320 LCKLVNTIQSNMVKKVNVSKMAFKCMENINAFLEAARQLGVPAQETFQTVDLW 478
           LC L N+++   VKKVN S MAFK MENI+ FL+ A +  V   E FQTVDL+
Sbjct: 66  LCTLANSLKPGSVKKVNTSAMAFKKMENISFFLKFAEEY-VQKSELFQTVDLY 117


>U97013-5|AAB52338.1|  142|Caenorhabditis elegans Calponin protein 3
           protein.
          Length = 142

 Score =  113 bits (271), Expect = 8e-26
 Identities = 53/110 (48%), Positives = 75/110 (68%)
 Frame = +2

Query: 146 NRATKSGFAAEAQRKINSKYSEELAQESLEWIRVITGEPENISGDMDNFYEVLKDGTLLC 325
           NR T  G     ++K +SK+ ++ A   LEWI+ ++GE  + SG+ DNF+ +LKDGTLLC
Sbjct: 3   NRTTAGGIGFAVRQKQDSKFIDKEATLLLEWIKKLSGENISTSGERDNFHNLLKDGTLLC 62

Query: 326 KLVNTIQSNMVKKVNVSKMAFKCMENINAFLEAARQLGVPAQETFQTVDL 475
           K  N I++  +KKV      F CMENINAF+E A++ GVP +ETFQ+V+L
Sbjct: 63  KAANGIEAGSIKKVQKPISTFACMENINAFVEFAKKQGVPNEETFQSVEL 112


>AF039711-7|AAB96713.3|  154|Caenorhabditis elegans Calponin protein
           4 protein.
          Length = 154

 Score = 96.7 bits (230), Expect = 8e-21
 Identities = 52/111 (46%), Positives = 66/111 (59%)
 Frame = +2

Query: 146 NRATKSGFAAEAQRKINSKYSEELAQESLEWIRVITGEPENISGDMDNFYEVLKDGTLLC 325
           +R   +G A     K  SK+++  A   LEWIR +T E  +     DNF E LKDG  LC
Sbjct: 6   HRPRPAGMAGAILDKQASKFNDVEAGYLLEWIRDLTKEDFDCEASRDNFREQLKDGQRLC 65

Query: 326 KLVNTIQSNMVKKVNVSKMAFKCMENINAFLEAARQLGVPAQETFQTVDLW 478
           KLVN I++  VKK+      F C+ENIN F  AAR LGV  +ETFQ+VDL+
Sbjct: 66  KLVNAIKAGSVKKIMKPISNFNCLENINQFSTAARSLGVKDEETFQSVDLF 116


>AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin protein
           2 protein.
          Length = 203

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
 Frame = +2

Query: 146 NRATKSGFAAEAQRKINSKYSEELAQESLEWIRVITGEPENIS----GDMDNFYEVLKDG 313
           N     G + E Q+K ++++  E A E L+WI  +TGE  +          +   +LKDG
Sbjct: 3   NHGPSYGLSRELQKKNDARFVLEEAIEVLKWIENVTGERFSFDVTTCESSTDVSNLLKDG 62

Query: 314 TLLCKLVNTIQSNMVKKVNVS-KMAFKCMENINAFLEAARQLGVPAQETFQTVDLW 478
            +LCKL+  +  +     N   KMAF  MENI+ FL AA+Q GV     FQTVDL+
Sbjct: 63  VMLCKLIEKLDPSCRVVYNKKPKMAFPMMENISNFLAAAKQFGVMEISCFQTVDLY 118


>U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform a protein.
          Length = 975

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +2

Query: 236 WIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQSNMVKKVNVSK----MAFKCMEN 403
           W+R +     + +G M  F  VL+DG LLC+L NT+  N + +  + +      F C  N
Sbjct: 14  WLRDMKVLTTDKNGTMLEFASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNN 73

Query: 404 INAF 415
           IN F
Sbjct: 74  INYF 77


>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform b protein.
          Length = 1007

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +2

Query: 236 WIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQSNMVKKVNVSK----MAFKCMEN 403
           W+R +     + +G M  F  VL+DG LLC+L NT+  N + +  + +      F C  N
Sbjct: 46  WLRDMKVLTTDKNGTMLEFASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNN 105

Query: 404 INAF 415
           IN F
Sbjct: 106 INYF 109


>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
          Length = 1007

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +2

Query: 236 WIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQSNMVKKVNVSK----MAFKCMEN 403
           W+R +     + +G M  F  VL+DG LLC+L NT+  N + +  + +      F C  N
Sbjct: 46  WLRDMKVLTTDKNGTMLEFASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNN 105

Query: 404 INAF 415
           IN F
Sbjct: 106 INYF 109


>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 33.5 bits (73), Expect = 0.081
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
 Frame = +2

Query: 203 YSEELAQESL--EWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTI--QSNMVKKVN 370
           + +E AQ++    WI     E  + SG +++ +E ++DG LLC L+  +  ++  V K  
Sbjct: 19  HEDEKAQKNTFTRWINFHL-EEHSSSGRIEDLFEDIRDGVLLCHLIEVLTGEALAVHKGR 77

Query: 371 VSKMAFKCMENINAFLEAARQLGV 442
           VSK     + N+   L   R+ G+
Sbjct: 78  VSKRVHH-IANLTTALTVLRRRGL 100


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
           anchorage protein1 protein.
          Length = 8545

 Score = 33.5 bits (73), Expect = 0.081
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
 Frame = +2

Query: 203 YSEELAQESL--EWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTI--QSNMVKKVN 370
           + +E AQ++    WI     E  + SG +++ +E ++DG LLC L+  +  ++  V K  
Sbjct: 19  HEDEKAQKNTFTRWINFHL-EEHSSSGRIEDLFEDIRDGVLLCHLIEVLTGEALAVHKGR 77

Query: 371 VSKMAFKCMENINAFLEAARQLGV 442
           VSK     + N+   L   R+ G+
Sbjct: 78  VSKRVHH-IANLTTALTVLRRRGL 100


>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
           protein 70, isoform a protein.
          Length = 2257

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 269 ISGDMDNFYEVLKDGTLLCKLVNTIQSNMVKKVNVSKMAFKCMENINAFLEAAR 430
           +S  + + Y  ++DG +L +L+  +    + K    KM   C+EN+   L+  R
Sbjct: 57  VSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110


>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
           protein 70, isoform b protein.
          Length = 2302

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 269 ISGDMDNFYEVLKDGTLLCKLVNTIQSNMVKKVNVSKMAFKCMENINAFLEAAR 430
           +S  + + Y  ++DG +L +L+  +    + K    KM   C+EN+   L+  R
Sbjct: 57  VSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110


>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
           protein.
          Length = 2257

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 269 ISGDMDNFYEVLKDGTLLCKLVNTIQSNMVKKVNVSKMAFKCMENINAFLEAAR 430
           +S  + + Y  ++DG +L +L+  +    + K    KM   C+EN+   L+  R
Sbjct: 57  VSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110


>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2257

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 269 ISGDMDNFYEVLKDGTLLCKLVNTIQSNMVKKVNVSKMAFKCMENINAFLEAAR 430
           +S  + + Y  ++DG +L +L+  +    + K    KM   C+EN+   L+  R
Sbjct: 57  VSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110


>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2302

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 269 ISGDMDNFYEVLKDGTLLCKLVNTIQSNMVKKVNVSKMAFKCMENINAFLEAAR 430
           +S  + + Y  ++DG +L +L+  +    + K    KM   C+EN+   L+  R
Sbjct: 57  VSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110


>U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical
           protein C14F11.2 protein.
          Length = 638

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 275 GDMDNFYEVLKDGTLLCKLVNTIQS---NMVKKVNVSKMAFKCMENINAFLEAARQLGVP 445
           GD+ +F   L DG  LCK +N +     ++    + S    +   N++ FL+  R++GVP
Sbjct: 540 GDI-SFSLQLSDGQELCKFINKLHPESISLASSTDSSIATTRSKMNVDRFLQYCRKIGVP 598

Query: 446 AQETFQTVDL 475
                  +D+
Sbjct: 599 ETTLCSQMDI 608


>Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1c protein.
          Length = 1210

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 266 NISGDMDNFYEVLKDGTLLCKLVNTI 343
           NISGD+ N  + +  GTLL  LV TI
Sbjct: 468 NISGDLANPQQAIPLGTLLAILVTTI 493


>Z82268-10|CAB05202.1|  972|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1a protein.
          Length = 972

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 266 NISGDMDNFYEVLKDGTLLCKLVNTI 343
           NISGD+ N  + +  GTLL  LV TI
Sbjct: 468 NISGDLANPQQAIPLGTLLAILVTTI 493


>Z81552-4|CAB04488.2|  765|Caenorhabditis elegans Hypothetical
           protein F56G4.6 protein.
          Length = 765

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +2

Query: 209 EELAQESLEWIRVITGEPE---NISGDMDNFYEVLKDGTLLCKLVNTIQSNMVKKVNVSK 379
           E+LA E+LE    I  E E   +++G M+N  +   D  L C+ +  I   M +K ++ K
Sbjct: 277 EKLANETLEQFLQIQHESEEYPSVAGVMENLSKQNIDERLFCQKICLINDIMHEKYSILK 336


>AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1c protein.
          Length = 1210

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 266 NISGDMDNFYEVLKDGTLLCKLVNTI 343
           NISGD+ N  + +  GTLL  LV TI
Sbjct: 468 NISGDLANPQQAIPLGTLLAILVTTI 493


>AL021476-1|CAA16317.1|  972|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1a protein.
          Length = 972

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 266 NISGDMDNFYEVLKDGTLLCKLVNTI 343
           NISGD+ N  + +  GTLL  LV TI
Sbjct: 468 NISGDLANPQQAIPLGTLLAILVTTI 493


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
 Frame = -3

Query: 333 TSLHNNVPSLSTS*KLSISPEMFSGSP-VITRIHSNDSWASSSLY----LLLIFLCASAA 169
           +SLH+ +P+  TS   + +P    G+P   T I  + +   S L+    L +++LC + +
Sbjct: 754 SSLHS-IPTAMTSLSTTTTPTHSQGAPSTSTPIGGSGNSTLSVLHQMEGLAIVYLCQTRS 812

Query: 168 NPDLVA 151
           NP  +A
Sbjct: 813 NPRAIA 818


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
 Frame = -3

Query: 333 TSLHNNVPSLSTS*KLSISPEMFSGSP-VITRIHSNDSWASSSLY----LLLIFLCASAA 169
           +SLH+ +P+  TS   + +P    G+P   T I  + +   S L+    L +++LC + +
Sbjct: 754 SSLHS-IPTAMTSLSTTTTPTHSQGAPSTSTPIGGSGNSTLSVLHQMEGLAIVYLCQTRS 812

Query: 168 NPDLVA 151
           NP  +A
Sbjct: 813 NPRAIA 818


>AF067613-5|AAN73864.1|  266|Caenorhabditis elegans Hypothetical
           protein F56D6.6 protein.
          Length = 266

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
 Frame = +2

Query: 122 LVLNKMANNRATKSGFAAEAQRKINSKYSEELAQESLEWI-RVITGEPENISGDMDNFYE 298
           L  N+M  N    +    E  RK N  +SE +    + WI +++   P+ +   M    E
Sbjct: 55  LSTNEMEKNANKTAEEQKEKDRKKNESFSEAILSFGVVWIVQIMMIIPQLVCLSMIFILE 114

Query: 299 VLK--DGTLLCKLVNTIQSNMVKKVNVSKMAFKCMEN 403
             +  D   L K  N   + M  K N  K A +  EN
Sbjct: 115 TSQAPDAAALQKTFNNSSAQM--KANFDKNAAESKEN 149


>Z95623-1|CAB09133.1|  314|Caenorhabditis elegans Hypothetical
           protein Y53C12C.1 protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 186 ERSTVNTAKNLPRSRWNGSELSPANPKTFPVIW 284
           E   + +A++L R R     L PA P  FP++W
Sbjct: 111 ELQMILSAQHLARPRAQQVRLPPAFPFPFPLVW 143


>Z81525-7|CAE17780.1|  263|Caenorhabditis elegans Hypothetical
           protein F33A8.10 protein.
          Length = 263

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 221 QESLEWIRVITGEPENIS-GDMDNFYEVLKDGT 316
           Q+SL+  R+I    E+ S GD D FYE+++  T
Sbjct: 128 QQSLQPTRIIPPFLESASVGDQDKFYEIVQHPT 160


>AC087081-8|AAY55899.1|  499|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.18 protein.
          Length = 499

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 451 LSRHAELPRCLEECVNVFHAFERHLGYVHFLHHVRLNG 338
           + RH   PR L  C+N F+  E H+    F  ++ +NG
Sbjct: 38  VDRHGIRPRHLYICLNRFNLLELHIDGAKF-KYINVNG 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,617,289
Number of Sequences: 27780
Number of extensions: 241343
Number of successful extensions: 716
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -