Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E09
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   117   8e-28
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   3.5  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   3.5  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   6.2  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           25   8.2  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   8.2  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   8.2  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   8.2  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.2  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  117 bits (282), Expect = 8e-28
 Identities = 52/78 (66%), Positives = 63/78 (80%)
 Frame = +2

Query: 161 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
           NPLF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 341 KTTAKGLFKILEKYRPET 394
           K TA  +FK+L KYRPET
Sbjct: 84  KNTATQVFKLLNKYRPET 101


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 275 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 376
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 288 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 386
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 347 TAKGLFKILEKYR 385
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 161 NPLFEKRTKNFAIGQDIQPTRDL 229
           +P+F KRT +F   Q ++ T+++
Sbjct: 315 SPVFRKRTSSFYFSQPLKATKEV 337


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 151 EDCKPSIREENKELCY 198
           E CK  + + NKELCY
Sbjct: 947 EACKACLLQGNKELCY 962


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 52  ELKSIQDGXXXXXXXDREKSSGRSTCGEES*A-QEDCKPSIREENKELC 195
           ELKS+ +G       D   S   S C +E  +     KPS   + K+ C
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 285 NTAF*RWMRIYFGHRTKRDRSLVGWMSWPIAKF 187
           N  F R +R+YF    + DRSL  +  W   ++
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQWLFRRY 203


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 318 TSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSV 416
           + + RH + P+ ++C  S RN G    +S K V
Sbjct: 106 SKAQRHVLDPRCQICVHSQRNDGDDNLESDKFV 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,507
Number of Sequences: 5004
Number of extensions: 32505
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)