Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_E08
(323 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce... 65 2e-12
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa... 30 0.075
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 25 2.1
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 25 2.1
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 2.1
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 25 2.8
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 24 4.9
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 24 6.5
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 23 8.6
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 23 8.6
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 23 8.6
>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 56
Score = 65.3 bits (152), Expect = 2e-12
Identities = 30/54 (55%), Positives = 34/54 (62%)
Frame = +1
Query: 55 MGHANIWYHTHVDTGRVPRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 216
M H N+W+ G+ R C R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54
>SPCC1223.12c |meu10||GPI anchored cell surface protein
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 416
Score = 30.3 bits (65), Expect = 0.075
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = +2
Query: 41 TNFTSWVTQISGITPT*IRAGFPVHAEPAQTDMVSFVNMA*ISAGSASESMRMILDLKSW 220
T+FT+W I+G TP G P + Q D+ N ++ GS +I++ S
Sbjct: 11 TSFTAWSVVIAGATPA--VCGAPEYIIETQNDLDVLSNCQVVN-GS------IIMNTSSA 61
Query: 221 TKLRFNKIFNVSEEL 265
T L FN+I ++ +L
Sbjct: 62 TSLNFNRIETITGDL 76
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 25.4 bits (53), Expect = 2.1
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 119 EPAQTDMVSFVNMA*ISAGSASESMRMILDLKSWTKLRFNKIFNVSEE 262
E ++ ++SFV++ S ES+ LK ++L F KIF VSEE
Sbjct: 334 EKEKSLVISFVDLP-----SFLESLLASNILKQLSRLHFTKIFAVSEE 376
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 2.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 19 LLGLEKTN*FYIMGHANIWYHTH 87
LL +E+ FY W+HTH
Sbjct: 270 LLRVERKGQFYFPSSVQCWFHTH 292
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 2.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 108 PFMPSLLKQTWSHS*IWLEYLQ 173
PF S L++TW++ W E LQ
Sbjct: 396 PFSGSTLQETWTNLYYWREMLQ 417
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 2.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 45 ILHHGSRKYLVSHPRRYGQGSPF 113
+ H S Y +S PR+YGQ + +
Sbjct: 589 VTRHHSEYYGMSDPRKYGQAAAY 611
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 24.2 bits (50), Expect = 4.9
Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +2
Query: 218 WTKLRFNKIF--NVSEELFHFYENQI 289
W +L+F+K F N+ + LF+F ++ +
Sbjct: 669 WARLQFDKFFNNNIQQLLFNFPKDSV 694
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 23.8 bits (49), Expect = 6.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 6 RVFPSFGSRENKLILHHGSRKYLVSHPRR 92
R SFG RE K +R LV+HP R
Sbjct: 425 RFSSSFGPRERKESFSSRNRLPLVNHPIR 453
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 23.4 bits (48), Expect = 8.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 169 RYSSHIYE*DHVCLSRLGMNGEPCPYLRGC 80
+ S I++ DHV L NG P + GC
Sbjct: 536 KISKKIHKWDHVVLYGSTANGLTIPIVHGC 565
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 23.4 bits (48), Expect = 8.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 203 LDLKSWTKLRFNKIFNV 253
LDL SW++ RF +I N+
Sbjct: 325 LDLMSWSEDRFQEIKNI 341
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 23.4 bits (48), Expect = 8.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 19 LLGLEKTN*FYIMGHANIWY 78
+ G +K N FY + N WY
Sbjct: 234 IYGFKKANQFYTVDQYNTWY 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,417,611
Number of Sequences: 5004
Number of extensions: 27441
Number of successful extensions: 75
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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